Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V A accession_type (biggr.models.Genome attribute) accession_value (biggr.models.Genome attribute) allow_flexible_variants (biggr.models.UniversalComponent attribute) alternative_transcript_id (biggr.models.Gene attribute) alternative_transcript_of (biggr.models.Gene attribute) annotation (biggr.models.AnnotationLink attribute) (biggr.models.AnnotationProperty attribute) (biggr.models.ComponentAnnotationMapping attribute) (biggr.models.ReactionAnnotationMapping attribute) (biggr.models.ReferenceCompoundAnnotationMapping attribute) (biggr.models.ReferenceReactionAnnotationMapping attribute) Annotation (class in biggr.models) annotation_id (biggr.models.AnnotationLink attribute) (biggr.models.AnnotationProperty attribute) (biggr.models.ComponentAnnotationMapping attribute) (biggr.models.ReactionAnnotationMapping attribute) (biggr.models.ReferenceCompoundAnnotationMapping attribute) (biggr.models.ReferenceReactionAnnotationMapping attribute) annotation_links (biggr.models.DataSource attribute) annotation_mappings (biggr.models.Component attribute) (biggr.models.Reaction attribute) (biggr.models.ReferenceCompound attribute) (biggr.models.ReferenceReaction attribute) AnnotationLink (class in biggr.models) AnnotationProperty (class in biggr.models) annotations (biggr.models.DataSource attribute) API_URL (in module biggr.objects) args (biggr.models.ORMDummy attribute) B b (biggr.models.InChI attribute) Base (class in biggr.models) base_filename (biggr.models.Model attribute) bigg_id (biggr.models.Annotation attribute) (biggr.models.BiGGBase attribute) (biggr.models.Compartment attribute) (biggr.models.CompartmentalizedComponent attribute) (biggr.models.Component attribute) (biggr.models.DataSource attribute) (biggr.models.EscherModule attribute) (biggr.models.GenomeRegion attribute) (biggr.models.MemoteTest attribute) (biggr.models.Model attribute) (biggr.models.ModelCollection attribute) (biggr.models.ModelCompartmentalizedComponent attribute) (biggr.models.ModelReaction attribute) (biggr.models.Reaction attribute) (biggr.models.ReferenceCompound attribute) (biggr.models.ReferenceReaction attribute) (biggr.models.ReferenceReactivePart attribute) (biggr.models.UniversalCompartmentalizedComponent attribute) (biggr.models.UniversalComponent attribute) (biggr.models.UniversalReaction attribute) bigg_id_match (biggr.models.ComponentAnnotationMapping attribute) (biggr.models.ReactionAnnotationMapping attribute) BiGGBase (class in biggr.models) biggr module biggr.cobra module biggr.models module biggr.objects module C c (biggr.models.InChI attribute) charge (biggr.models.Component attribute) (biggr.models.ReferenceCompound attribute) (biggr.models.ReferenceReactivePart attribute) charge() (biggr.models.InChI method) charge_to_string() (biggr.models.Component static method) children (biggr.models.Taxon attribute) chromosome (biggr.models.GenomeRegion attribute) Chromosome (class in biggr.models) chromosome_id (biggr.models.GenomeRegion attribute) chromosomes (biggr.models.Genome attribute) coefficient (biggr.models.ReferenceReactionParticipant attribute) (biggr.models.UniversalReactionMatrix attribute) coefficient_to_string() (biggr.models.Reaction static method) collection (biggr.models.Component attribute) (biggr.models.Model attribute) (biggr.models.Reaction attribute) (biggr.models.UniversalComponent attribute) (biggr.models.UniversalReaction attribute) collection_id (biggr.models.Component attribute) (biggr.models.Model attribute) (biggr.models.Reaction attribute) (biggr.models.UniversalComponent attribute) (biggr.models.UniversalReaction attribute) collection_namespace_components (biggr.models.ModelCollection attribute) collection_namespace_reactions (biggr.models.ModelCollection attribute) collection_namespace_universal_components (biggr.models.ModelCollection attribute) collection_namespace_universal_reactions (biggr.models.ModelCollection attribute) collections (biggr.models.Publication attribute) (biggr.models.Taxon attribute) compartment (biggr.models.CompartmentalizedComponent attribute) (biggr.models.ReferenceReactionParticipant attribute) (biggr.models.UniversalCompartmentalizedComponent attribute) Compartment (class in biggr.models) compartment_id (biggr.models.CompartmentalizedComponent attribute) (biggr.models.UniversalCompartmentalizedComponent attribute) compartmentalized_component (biggr.models.ModelCompartmentalizedComponent attribute) (biggr.models.ReactionMatrix attribute) compartmentalized_component_id (biggr.models.ModelCompartmentalizedComponent attribute) (biggr.models.ReactionMatrix attribute) compartmentalized_components (biggr.models.Compartment attribute) (biggr.models.Component attribute) (biggr.models.UniversalCompartmentalizedComponent attribute) CompartmentalizedComponent (class in biggr.models) component (biggr.models.CompartmentalizedComponent attribute) (biggr.models.ComponentAnnotationMapping attribute) (biggr.models.ComponentReferenceMapping attribute) Component (class in biggr.models) component_id (biggr.models.CompartmentalizedComponent attribute) (biggr.models.ComponentAnnotationMapping attribute) (biggr.models.ComponentReferenceMapping attribute) component_mappings (biggr.models.Annotation attribute) ComponentAnnotationMapping (class in biggr.models) ComponentIDMapping (class in biggr.models) ComponentReferenceMapping (class in biggr.models) components (biggr.models.UniversalComponent attribute) compound (biggr.models.ReferenceReactionParticipant attribute) (biggr.models.ReferenceReactivePartMatrix attribute) compound_id (biggr.models.ReferenceReactionParticipant attribute) (biggr.models.ReferenceReactivePartMatrix attribute) compound_type (biggr.models.ReferenceCompound attribute) COMPOUND_TYPE_TO_SBO (in module biggr.models) copy_number (biggr.models.ModelReaction attribute) (biggr.models.Reaction attribute) create_id() (biggr.models.ModelReaction static method) (biggr.models.Reaction static method) custom_enums (in module biggr.models) D data (biggr.models.MemoteResult attribute) data_count (biggr.models.MemoteResult attribute) data_source (biggr.models.AnnotationLink attribute) (biggr.models.Synonym attribute) data_source_id (biggr.models.AnnotationLink attribute) (biggr.models.Synonym attribute) DataSource (class in biggr.models) date_modified (biggr.models.Model attribute) DateTime (in module biggr.models) DeclarativeBase (class in biggr.models) DeclarativeMeta (class in biggr.models) default_component (biggr.models.UniversalComponent attribute) default_component_id (biggr.models.UniversalComponent attribute) default_data_source (biggr.models.Annotation attribute) default_data_source_id (biggr.models.Annotation attribute) deprecated_id (biggr.models.DeprecatedID attribute) DeprecatedID (class in biggr.models) description (biggr.models.EscherModule attribute) (biggr.models.ModelCollection attribute) distance (biggr.models.GenomeRegionMap attribute) dna_sequence (biggr.models.GenomeRegion attribute) dummy_col_f() (in module biggr.models) dummy_f() (in module biggr.models) duration (biggr.models.MemoteResult attribute) E Enum (in module biggr.models) equation (biggr.models.ReferenceReaction attribute) escher_map (biggr.models.EscherMapMatrix attribute) escher_map_element_id (biggr.models.EscherMapMatrix attribute) escher_map_id (biggr.models.EscherMapMatrix attribute) escher_mappings (biggr.models.ModelReaction attribute) escher_maps (biggr.models.Model attribute) escher_module (biggr.models.ModelReactionEscherMapping attribute) escher_module_id (biggr.models.ModelReactionEscherMapping attribute) EscherMap (class in biggr.models) EscherMapMatrix (class in biggr.models) EscherModule (class in biggr.models) F field (biggr.models.MemoteTest attribute) find_metabolite() (in module biggr.cobra) ForeignKey (in module biggr.models) format_type (biggr.models.MemoteTest attribute) formula (biggr.models.Component attribute) (biggr.models.InChI attribute) (biggr.models.ReferenceCompound attribute) (biggr.models.ReferenceReactivePart attribute) from_dict() (biggr.models.Base class method) G gene (biggr.models.ModelGene attribute) Gene (class in biggr.models) gene_count (biggr.models.ModelCount attribute) gene_id (biggr.models.ModelGene attribute) gene_reaction_rule (biggr.models.ModelReaction attribute) generate_hash() (biggr.models.Reaction static method) (biggr.models.ReferenceReaction static method) (biggr.models.UniversalReaction static method) GeneReactionMatrix (class in biggr.models) genome (biggr.models.Chromosome attribute) (biggr.models.Model attribute) Genome (class in biggr.models) genome_id (biggr.models.Chromosome attribute) (biggr.models.Model attribute) genome_region_1 (biggr.models.GenomeRegionMap attribute) genome_region_2 (biggr.models.GenomeRegionMap attribute) genome_region_id_1 (biggr.models.GenomeRegionMap attribute) genome_region_id_2 (biggr.models.GenomeRegionMap attribute) genome_regions (biggr.models.Chromosome attribute) GenomeRegion (class in biggr.models) GenomeRegionMap (class in biggr.models) genomes (biggr.models.Taxon attribute) get() (in module biggr.objects) get_metabolites_by_identifiers() (in module biggr.objects) get_raw() (in module biggr.objects) get_sbo() (biggr.models.ReferenceCompound method) (biggr.models.UniversalReaction method) H h (biggr.models.InChI attribute) hash (biggr.models.Reaction attribute) (biggr.models.ReferenceReaction attribute) (biggr.models.UniversalReaction attribute) HASH_STR_MAX_LEN (in module biggr.models) html_name (biggr.models.ReferenceCompound attribute) (biggr.models.ReferenceReactivePart attribute) hybrid_property() (in module biggr.models) I id (biggr.models.Annotation attribute) (biggr.models.AnnotationLink attribute) (biggr.models.AnnotationProperty attribute) (biggr.models.BiGGBase attribute) (biggr.models.Chromosome attribute) (biggr.models.Compartment attribute) (biggr.models.CompartmentalizedComponent attribute) (biggr.models.Component attribute) (biggr.models.ComponentAnnotationMapping attribute) (biggr.models.ComponentReferenceMapping attribute) (biggr.models.DataSource attribute) (biggr.models.DeprecatedID attribute) (biggr.models.EscherMap attribute) (biggr.models.EscherMapMatrix attribute) (biggr.models.EscherModule attribute) (biggr.models.Gene attribute) (biggr.models.GeneReactionMatrix attribute) (biggr.models.Genome attribute) (biggr.models.GenomeRegion attribute) (biggr.models.InChI attribute) (biggr.models.MemoteResult attribute) (biggr.models.MemoteTest attribute) (biggr.models.Model attribute) (biggr.models.ModelCollection attribute) (biggr.models.ModelCompartmentalizedComponent attribute) (biggr.models.ModelCount attribute) (biggr.models.ModelGene attribute) (biggr.models.ModelReaction attribute) (biggr.models.ModelReactionEscherMapping attribute) (biggr.models.OldIDSynonym attribute) (biggr.models.Publication attribute) (biggr.models.Reaction attribute) (biggr.models.ReactionAnnotationMapping attribute) (biggr.models.ReactionMatrix attribute) (biggr.models.ReferenceCompound attribute) (biggr.models.ReferenceCompoundAnnotationMapping attribute) (biggr.models.ReferenceReaction attribute) (biggr.models.ReferenceReactionAnnotationMapping attribute) (biggr.models.ReferenceReactionParticipant attribute) (biggr.models.ReferenceReactivePart attribute) (biggr.models.ReferenceReactivePartMatrix attribute) (biggr.models.Synonym attribute) (biggr.models.Taxon attribute) (biggr.models.TaxonomicRank attribute) (biggr.models.UniversalCompartmentalizedComponent attribute) (biggr.models.UniversalComponent attribute) (biggr.models.UniversalComponentReferenceMapping attribute) (biggr.models.UniversalReaction attribute) (biggr.models.UniversalReactionMatrix attribute) id_in_original_model (biggr.models.ModelCompartmentalizedComponent attribute) (biggr.models.ModelReaction attribute) identifier (biggr.models.AnnotationLink attribute) IDENTIFIERS_API_URL (in module biggr.objects) inchi (biggr.models.ReferenceCompound attribute) (biggr.models.ReferenceReactivePart attribute) InChI (class in biggr.models) inchi_id (biggr.models.ReferenceCompound attribute) (biggr.models.ReferenceReactivePart attribute) inchi_match (biggr.models.ComponentAnnotationMapping attribute) interpret_id() (biggr.models.ModelReaction static method) invert (biggr.models.MemoteTest attribute) invert_result (biggr.models.MemoteTest attribute) is_exchange (biggr.models.UniversalReaction attribute) is_obsolete (biggr.models.Annotation attribute) is_pseudo (biggr.models.UniversalReaction attribute) is_transport (biggr.models.UniversalReaction attribute) K key (biggr.models.AnnotationProperty attribute) key() (biggr.models.InChI method) key_major (biggr.models.InChI attribute) key_minor (biggr.models.InChI attribute) key_proton (biggr.models.InChI attribute) kwargs (biggr.models.ORMDummy attribute) L LAZY_LOADING (in module biggr.models) leftpos (biggr.models.GenomeRegion attribute) links (biggr.models.Annotation attribute) locus_tag (biggr.models.Gene attribute) lower_bound (biggr.models.ModelReaction attribute) M m (biggr.models.InChI attribute) map_data (biggr.models.EscherMap attribute) map_name (biggr.models.EscherMap attribute) Mapped (class in biggr.models) mapped_column (in module biggr.models) mapped_to_genbank (biggr.models.Gene attribute) mapping (biggr.models.UniversalComponentReferenceMapping attribute) mapping_id (biggr.models.UniversalComponentReferenceMapping attribute) matrix (biggr.models.CompartmentalizedComponent attribute) (biggr.models.EscherMap attribute) (biggr.models.Reaction attribute) (biggr.models.ReferenceReactivePart attribute) (biggr.models.UniversalCompartmentalizedComponent attribute) (biggr.models.UniversalReaction attribute) memote_results (biggr.models.Model attribute) (biggr.models.ModelCompartmentalizedComponent attribute) (biggr.models.ModelGene attribute) (biggr.models.ModelReaction attribute) MemoteResult (class in biggr.models) MemoteTest (class in biggr.models) message (biggr.models.MemoteResult attribute) METABOLITE_ANNOTATION_PRIORITY (in module biggr.cobra) metabolite_count (biggr.models.ModelCount attribute) metric (biggr.models.MemoteResult attribute) model (biggr.models.EscherMap attribute) (biggr.models.MemoteResult attribute) (biggr.models.ModelCompartmentalizedComponent attribute) (biggr.models.ModelCount attribute) (biggr.models.ModelGene attribute) (biggr.models.ModelReaction attribute) (biggr.models.PublicationModel attribute) Model (class in biggr.models) model_compartmentalized_component (biggr.models.MemoteResult attribute) model_compartmentalized_component_id (biggr.models.MemoteResult attribute) model_compartmentalized_components (biggr.models.CompartmentalizedComponent attribute) (biggr.models.Model attribute) model_count (biggr.models.Model attribute) model_gene (biggr.models.GeneReactionMatrix attribute) (biggr.models.MemoteResult attribute) model_gene_id (biggr.models.GeneReactionMatrix attribute) (biggr.models.MemoteResult attribute) model_genes (biggr.models.Gene attribute) (biggr.models.Model attribute) model_id (biggr.models.EscherMap attribute) (biggr.models.MemoteResult attribute) (biggr.models.ModelCompartmentalizedComponent attribute) (biggr.models.ModelCount attribute) (biggr.models.ModelGene attribute) (biggr.models.ModelReaction attribute) (biggr.models.PublicationModel attribute) MODEL_NAMES (in module biggr.objects) model_reaction (biggr.models.GeneReactionMatrix attribute) (biggr.models.MemoteResult attribute) (biggr.models.ModelReactionEscherMapping attribute) model_reaction_id (biggr.models.GeneReactionMatrix attribute) (biggr.models.MemoteResult attribute) (biggr.models.ModelReactionEscherMapping attribute) model_reaction_mappings (biggr.models.EscherModule attribute) model_reactions (biggr.models.Model attribute) (biggr.models.Reaction attribute) ModelCollection (class in biggr.models) ModelCompartmentalizedComponent (class in biggr.models) ModelCount (class in biggr.models) ModelGene (class in biggr.models) ModelReaction (class in biggr.models) ModelReactionEscherMapping (class in biggr.models) models (biggr.models.Genome attribute) (biggr.models.ModelCollection attribute) (biggr.models.Taxon attribute) module biggr biggr.cobra biggr.models biggr.objects N n_protons() (biggr.models.InChI method) name (biggr.models.Compartment attribute) (biggr.models.Component attribute) (biggr.models.DataSource attribute) (biggr.models.EscherModule attribute) (biggr.models.Gene attribute) (biggr.models.MemoteTest attribute) (biggr.models.ReferenceCompound attribute) (biggr.models.ReferenceReaction attribute) (biggr.models.ReferenceReactivePart attribute) (biggr.models.Taxon attribute) (biggr.models.TaxonomicRank attribute) (biggr.models.UniversalComponent attribute) (biggr.models.UniversalReaction attribute) ncbi_accession (biggr.models.Chromosome attribute) ncbi_assembly_id (biggr.models.Genome attribute) new_id (biggr.models.ComponentIDMapping attribute) new_universal_component (biggr.models.ComponentIDMapping attribute) O OBJECT_CACHE (in module biggr.models) objective_coefficient (biggr.models.ModelReaction attribute) OBJECTS_API_URL (in module biggr.objects) old_bigg_id (biggr.models.ComponentIDMapping attribute) old_bigg_ids (biggr.models.UniversalComponent attribute) OldIDSynonym (class in biggr.models) ome_id (biggr.models.DeprecatedID attribute) (biggr.models.EscherMapMatrix attribute) (biggr.models.OldIDSynonym attribute) (biggr.models.Synonym attribute) oneliner (biggr.models.ModelCollection attribute) organism (biggr.models.Genome attribute) (biggr.models.Model attribute) original_gene_reaction_rule (biggr.models.ModelReaction attribute) ORMDummy (class in biggr.models) P p (biggr.models.InChI attribute) parent (biggr.models.Taxon attribute) parent_id (biggr.models.Taxon attribute) pattern_match (biggr.models.ReactionAnnotationMapping attribute) priority (biggr.models.EscherMap attribute) properties (biggr.models.Annotation attribute) PropertyNotLoaded (class in biggr.models) protein_sequence (biggr.models.GenomeRegion attribute) publication (biggr.models.ModelCollection attribute) (biggr.models.PublicationModel attribute) Publication (class in biggr.models) publication_id (biggr.models.ModelCollection attribute) (biggr.models.PublicationModel attribute) publication_models (biggr.models.Model attribute) (biggr.models.Publication attribute) PublicationModel (class in biggr.models) published_filename (biggr.models.Model attribute) Q q (biggr.models.InChI attribute) R rank (biggr.models.Taxon attribute) rank_id (biggr.models.Taxon attribute) reaction (biggr.models.ModelReaction attribute) (biggr.models.ReactionAnnotationMapping attribute) (biggr.models.ReactionMatrix attribute) (biggr.models.ReferenceReactionParticipant attribute) Reaction (class in biggr.models) reaction_count (biggr.models.ModelCount attribute) reaction_id (biggr.models.ModelReaction attribute) (biggr.models.ReactionAnnotationMapping attribute) (biggr.models.ReactionMatrix attribute) (biggr.models.ReferenceReactionParticipant attribute) reaction_mappings (biggr.models.Annotation attribute) reaction_matrices (biggr.models.UniversalReactionMatrix attribute) reaction_matrix (biggr.models.ModelGene attribute) (biggr.models.ModelReaction attribute) reaction_participants (biggr.models.ReferenceCompound attribute) (biggr.models.ReferenceReaction attribute) ReactionAnnotationMapping (class in biggr.models) ReactionMatrix (class in biggr.models) reactions (biggr.models.UniversalReaction attribute) reactive_part (biggr.models.ReferenceReactivePartMatrix attribute) reactive_part_id (biggr.models.ReferenceReactivePartMatrix attribute) reactive_part_matrix (biggr.models.ReferenceCompound attribute) reference (biggr.models.UniversalReaction attribute) reference_compound (biggr.models.ComponentReferenceMapping attribute) (biggr.models.ReferenceCompoundAnnotationMapping attribute) reference_compound_id (biggr.models.ComponentReferenceMapping attribute) (biggr.models.ReferenceCompoundAnnotationMapping attribute) reference_compound_mappings (biggr.models.Annotation attribute) reference_compounds (biggr.models.InChI attribute) reference_formula_delta (biggr.models.ComponentReferenceMapping attribute) reference_id (biggr.models.Publication attribute) (biggr.models.UniversalReaction attribute) reference_mapping (biggr.models.UniversalComponent attribute) reference_mappings (biggr.models.Component attribute) (biggr.models.ReferenceCompound attribute) (biggr.models.UniversalComponent attribute) reference_match (biggr.models.ComponentAnnotationMapping attribute) reference_n (biggr.models.ComponentReferenceMapping attribute) reference_reaction (biggr.models.ReferenceReactionAnnotationMapping attribute) reference_reaction_id (biggr.models.ReferenceReactionAnnotationMapping attribute) reference_reaction_mappings (biggr.models.Annotation attribute) reference_reaction_participant (biggr.models.UniversalReactionMatrix attribute) reference_reaction_participant_id (biggr.models.UniversalReactionMatrix attribute) reference_reactive_parts (biggr.models.InChI attribute) reference_type (biggr.models.Publication attribute) ReferenceCompound (class in biggr.models) ReferenceCompoundAnnotationMapping (class in biggr.models) ReferenceReaction (class in biggr.models) ReferenceReactionAnnotationMapping (class in biggr.models) ReferenceReactionParticipant (class in biggr.models) ReferenceReactivePart (class in biggr.models) ReferenceReactivePartMatrix (class in biggr.models) relationship (in module biggr.models) result (biggr.models.MemoteResult attribute) results (biggr.models.MemoteTest attribute) reversed (biggr.models.ModelReaction attribute) rightpos (biggr.models.GenomeRegion attribute) S s (biggr.models.InChI attribute) side (biggr.models.ReferenceReactionParticipant attribute) strain (biggr.models.Genome attribute) strand (biggr.models.GenomeRegion attribute) String (in module biggr.models) subsystem (biggr.models.ModelReaction attribute) summary (biggr.models.MemoteTest attribute) synonym (biggr.models.Synonym attribute) Synonym (class in biggr.models) synonym_id (biggr.models.OldIDSynonym attribute) synonyms (biggr.models.DataSource attribute) T t (biggr.models.InChI attribute) T (in module biggr.models) taxon (biggr.models.Genome attribute) (biggr.models.Model attribute) (biggr.models.ModelCollection attribute) Taxon (class in biggr.models) taxon_id (biggr.models.Genome attribute) (biggr.models.Model attribute) (biggr.models.ModelCollection attribute) TaxonomicRank (class in biggr.models) taxons (biggr.models.TaxonomicRank attribute) test (biggr.models.MemoteResult attribute) test_id (biggr.models.MemoteResult attribute) type (biggr.models.Annotation attribute) (biggr.models.AnnotationProperty attribute) (biggr.models.DeprecatedID attribute) (biggr.models.EscherMapMatrix attribute) (biggr.models.GenomeRegion attribute) (biggr.models.OldIDSynonym attribute) (biggr.models.Synonym attribute) U UniqueConstraint (in module biggr.models) universal_compartmentalized_component (biggr.models.CompartmentalizedComponent attribute) (biggr.models.UniversalReactionMatrix attribute) universal_compartmentalized_component_id (biggr.models.CompartmentalizedComponent attribute) (biggr.models.UniversalReactionMatrix attribute) universal_compartmentalized_components (biggr.models.Compartment attribute) (biggr.models.UniversalComponent attribute) universal_component (biggr.models.Component attribute) (biggr.models.ComponentReferenceMapping attribute) (biggr.models.UniversalCompartmentalizedComponent attribute) (biggr.models.UniversalComponentReferenceMapping attribute) universal_component_id (biggr.models.Component attribute) (biggr.models.ComponentReferenceMapping attribute) (biggr.models.UniversalCompartmentalizedComponent attribute) universal_component_reference_mapping (biggr.models.ComponentReferenceMapping attribute) universal_reaction (biggr.models.Reaction attribute) (biggr.models.UniversalReactionMatrix attribute) universal_reaction_id (biggr.models.Reaction attribute) (biggr.models.UniversalReactionMatrix attribute) universal_reaction_matrix (biggr.models.ReactionMatrix attribute) (biggr.models.ReferenceReactionParticipant attribute) universal_reaction_matrix_id (biggr.models.ReactionMatrix attribute) universal_reactions (biggr.models.ReferenceReaction attribute) UniversalCompartmentalizedComponent (class in biggr.models) UniversalComponent (class in biggr.models) UniversalComponentReferenceMapping (class in biggr.models) UniversalReaction (class in biggr.models) UniversalReactionMatrix (class in biggr.models) update_hash() (biggr.models.ReferenceReaction method) update_metabolite() (in module biggr.cobra) upper_bound (biggr.models.ModelReaction attribute) url_prefix (biggr.models.DataSource attribute) V value() (biggr.models.AnnotationProperty method) value_float (biggr.models.AnnotationProperty attribute) value_int (biggr.models.AnnotationProperty attribute) value_str (biggr.models.AnnotationProperty attribute) variant (biggr.models.Component attribute)