Index A | B | C | D | F | G | H | I | K | L | M | N | O | P | R | S | T | U | X | Y A add_label() (biggr_maps.map.Map method) add_metabolite() (biggr_maps.map.AutoReaction method) (biggr_maps.map.Reaction method) add_node() (biggr_maps.map.Map method) add_optional_metabolite() (biggr_maps.map.AutoReactionWithOptionalMetabolites method) add_reaction() (biggr_maps.map.Map method) add_segment() (biggr_maps.map.Map method) (biggr_maps.map.Reaction method) alternating_pathways_sides() (in module biggr_maps.pathway) alternating_side_placement() (biggr_maps.map.AutoReaction method) angle (biggr_maps.map.AutoReaction attribute) AutoReaction (class in biggr_maps.map) AutoReactionWithOptionalMetabolites (class in biggr_maps.map) B b1 (biggr_maps.map.Segment attribute) b1_scale (biggr_maps.map.PlacementOptions attribute) b2 (biggr_maps.map.Segment attribute) b2_scale (biggr_maps.map.PlacementOptions attribute) batched() (in module biggr_maps.kgml) bigg_id (biggr_maps.map.MetaboliteNode attribute) (biggr_maps.map.Reaction attribute) biggr_maps module biggr_maps.escher module biggr_maps.kgml module biggr_maps.map module biggr_maps.pathway module biggr_maps.template module C calculate_placement() (biggr_maps.map.AutoReaction method) canvas (biggr_maps.map.Map attribute) copy() (biggr_maps.map.Node method) cubic_bezier_bt() (in module biggr_maps.map) D default_text_offset() (in module biggr_maps.map) delta (biggr_maps.map.PlacementOptions attribute) delta_tolerance (biggr_maps.map.PlacementOptions attribute) description (biggr_maps.map.Map attribute) display_builder() (in module biggr_maps.escher) F finalized (biggr_maps.map.AutoReactionWithOptionalMetabolites attribute) fit_canvas() (biggr_maps.map.Map method) from_node (biggr_maps.map.Segment attribute) G gene_reaction_rule (biggr_maps.map.Reaction attribute) genes (biggr_maps.map.Reaction attribute) H homepage (biggr_maps.map.Map attribute) I identifier (biggr_maps.map.Node attribute) (biggr_maps.map.Reaction attribute) (biggr_maps.map.Segment attribute) (biggr_maps.map.TextLabel attribute) is_within() (in module biggr_maps.kgml) K kgml_to_escher_map() (in module biggr_maps.kgml) L label_x (biggr_maps.map.MetaboliteNode attribute) (biggr_maps.map.Reaction attribute) label_y (biggr_maps.map.MetaboliteNode attribute) (biggr_maps.map.Reaction attribute) labels (biggr_maps.map.Map attribute) load_as_template() (in module biggr_maps.template) M Map (class in biggr_maps.map) MetaboliteNode (class in biggr_maps.map) metabolites (biggr_maps.map.Reaction attribute) mid_marker (biggr_maps.map.Reaction attribute) MidMarkerNode (class in biggr_maps.map) module biggr_maps biggr_maps.escher biggr_maps.kgml biggr_maps.map biggr_maps.pathway biggr_maps.template multi_markers (biggr_maps.map.Reaction attribute) MultiMarkerNode (class in biggr_maps.map) N name (biggr_maps.map.Map attribute) (biggr_maps.map.MetaboliteNode attribute) (biggr_maps.map.Reaction attribute) Node (class in biggr_maps.map) node_from_dict() (in module biggr_maps.map) node_is_primary (biggr_maps.map.MetaboliteNode attribute) node_type (biggr_maps.map.MetaboliteNode attribute) (biggr_maps.map.MidMarkerNode attribute) (biggr_maps.map.MultiMarkerNode attribute) (biggr_maps.map.Node attribute) nodes (biggr_maps.map.Map attribute) non_primary_scaling() (in module biggr_maps.map) O optional_metabolites (biggr_maps.map.AutoReactionWithOptionalMetabolites attribute) P place_reaction_on_backbone() (in module biggr_maps.pathway) placement_f (biggr_maps.map.PlacementOptions attribute) PlacementOptions (class in biggr_maps.map) R Reaction (class in biggr_maps.map) reactions (biggr_maps.map.Map attribute) reversibility (biggr_maps.map.Reaction attribute) S same_side_placement() (biggr_maps.map.AutoReaction method) scale (biggr_maps.map.PlacementOptions attribute) schema (biggr_maps.map.Map attribute) Segment (class in biggr_maps.map) segments (biggr_maps.map.Map attribute) (biggr_maps.map.Reaction attribute) T text (biggr_maps.map.TextLabel attribute) text_y_correction (biggr_maps.map.PlacementOptions attribute) TextLabel (class in biggr_maps.map) to_escher() (biggr_maps.map.Map method) (biggr_maps.map.Node method) (biggr_maps.map.Reaction method) (biggr_maps.map.Segment method) (biggr_maps.map.TextLabel method) to_node (biggr_maps.map.Segment attribute) U unit (biggr_maps.map.AutoReaction attribute) X x (biggr_maps.map.Node attribute) (biggr_maps.map.TextLabel attribute) Y y (biggr_maps.map.Node attribute) (biggr_maps.map.TextLabel attribute)