Trainings

On November 2024, the Data Science platform from DTU Biosustain launched a series of hands-on workshops about different Data Science subjects and about different data types for our DTU research fellows. All course materials are freely available below. If interested, stay tuned for future Data Science workshops!

Full-day data type workshops (7h)

Metagenomics

Find the repo here.

biosustain.github.io/dsp_metagenomics_training

Transcriptomics (rnaseq)

Find the repo here.

biosustain.github.io/dsp_transcriptomics_training

Mass-spectrometry-based proteomics

Find the repo here

biosustain.github.io/dsp_proteomics_workshop

Mass-spectrometry-based metabolomics

Find the repo here

biosustain.github.io/dsp_metabolomics_workshop

Half-day technical workshops (3 h)

Command line basics

Introduction the command line with bash

You can find the slides here.

github.com/biosustain/dsp_workshop_bash

Github and Git

Introduction to Github and Git

Learn how to use, collaborate and eventually contribute to projects on GitHub (or GitLab or Bitbucket).

Find the instructions for the training here.

github.com/biosustain/git-tutorial

Nextflow

Nextflow training

Learn how to create and manage reproducible workflows using Nextflow.

Find the material as a website here.

github.com/biosustain/dsp_nextflow_training

Docker basics

Writing your DockerFile to containerize your app/software

Learn the basics of containerization and how to use Docker for reproducible research.

Find the slides and hands-on material (running in GitHub Codespaces).

github.com/biosustain/dsp_docker_training

Data Visualization with R

Data Visualization with R

Learn how to create informative and visually appealing graphics using R. Same plots as in the Python course.

The material is available as a html document for direct viewing here or downloaded from GitHub’s website.

github.com/biosustain/dsp_workshop_datavizR

Data Visualization with Python

Data Visualization with Python

Learn how to create informative and visually appealing graphics using Python. Same plots as in the R course.

Course is in development.

biosustain.github.io/dsp_workshop_dataviz_python/

Automation

GitHub Actions Tutorial

First introduction to continuous integration and continuous deployment (CI/CD) using GitHub Actions.

github.com/biosustain/dsp_actions_tutorial