Welcome to shu’s documentation!

shu is an interface to plot data on top of metabolic networks, with emphasis in multi-dimensional data across diferent conditions and distributions.

Shu is available as a web application at https://biosustain.github.io/shu or as a native application (see releases).

Check out the Plotting section for an overview on how to generate and plot data into the map. The File Formats explains the map (with is fully compatible with escher) and data especification.

Controls

  • Left click and drag to move around the map.

  • Scroll whell to zoom in and out.

  • Right click on a histogram or the legend (on its center) and drag the mouse while holding the button to zoom in/out to rotate it. On axis mode, scale the axis instead.

  • Middle click on a histogram or the legend (on its center) and drag the mouse while holding the button to move it.

  • + and - keys to scale up and down the legend. If Control is pressed, the Settings are scale

  • s to toggle axis mode, which shows the histogram axes and allows for scaling them.

  • The Settings window can be used to change the appeareance and export the map as a json or an image.

Contents