{
 "msa": [
  {
   "reference": false,
   "leadingGaps": 0,
   "align": "ACGTGCGTACGT",
   "forward": true
  },
  {
   "reference": false,
   "leadingGaps": 0,
   "align": "ACGTGCGTTCGT",
   "forward": false
  },
  {
   "reference": true,
   "leadingGaps": 0,
   "align": "ACGTACGTACGT"
  }
 ],
 "gappedTraces": [
  {
   "traceFileName": "pearl_a_read1.ab1",
   "leadingGaps": 0,
   "peakA": [
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100
   ],
   "peakC": [
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110
   ],
   "peakG": [
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120
   ],
   "peakT": [
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130
   ],
   "basecallPos": [
    5,
    15,
    25,
    35,
    45,
    55,
    65,
    75,
    85,
    95,
    105,
    115
   ],
   "basecalls": {
    "5": "A:5",
    "15": "C:15",
    "25": "G:25",
    "35": "T:35",
    "45": "G:45",
    "55": "C:55",
    "65": "G:65",
    "75": "T:75",
    "85": "A:85",
    "95": "C:95",
    "105": "G:105",
    "115": "T:115"
   }
  },
  {
   "traceFileName": "pearl_b_read2.ab1",
   "leadingGaps": 0,
   "peakA": [
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100,
    100
   ],
   "peakC": [
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110,
    110
   ],
   "peakG": [
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120,
    120
   ],
   "peakT": [
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130,
    130
   ],
   "basecallPos": [
    5,
    15,
    25,
    35,
    45,
    55,
    65,
    75,
    85,
    95,
    105,
    115
   ],
   "basecalls": {
    "5": "A:5",
    "15": "C:15",
    "25": "G:25",
    "35": "T:35",
    "45": "G:45",
    "55": "C:55",
    "65": "G:65",
    "75": "T:75",
    "85": "T:85",
    "95": "C:95",
    "105": "G:105",
    "115": "T:115"
   }
  }
 ],
 "gappedConsensus": "ACGTGCGTACGT"
}