biggr.models

Contents

2.1.2. biggr.models#

Module to mimic the cobradb models

Attributes#

`OBJECT_CACHE`
`LAZY_LOADING`
`T`
`ForeignKey`
`UniqueConstraint`
`Enum`
`mapped_column`
`relationship`
`String`
`DateTime`
`HASH_STR_MAX_LEN`
`custom_enums`
`COMPOUND_TYPE_TO_SBO`

Classes#

`Mapped`	Makes it easier to reuse cobradb/sqlalchemy code.
`PropertyNotLoaded`
`ORMDummy`
`DeclarativeMeta`
`DeclarativeBase`
`Base`
`BiGGBase`
`InChI`
`TaxonomicRank`
`Taxon`
`ModelCollection`
`Genome`
`Chromosome`
`GenomeRegion`
`ReferenceCompound`
`UniversalComponent`
`Component`
`ComponentReferenceMapping`
`UniversalComponentReferenceMapping`
`DataSource`
`Annotation`
`AnnotationProperty`
`AnnotationLink`
`ComponentAnnotationMapping`
`ReactionAnnotationMapping`
`ReferenceCompoundAnnotationMapping`
`ReferenceReactionAnnotationMapping`
`Synonym`
`Publication`
`PublicationModel`
`OldIDSynonym`
`GenomeRegionMap`
`DeprecatedID`
`Model`
`ModelGene`
`ModelReaction`
`GeneReactionMatrix`
`UniversalCompartmentalizedComponent`
`CompartmentalizedComponent`
`ModelCompartmentalizedComponent`
`Compartment`
`EscherMap`
`EscherMapMatrix`
`ModelCount`
`Gene`
`ReferenceReactivePart`
`ReferenceReactivePartMatrix`
`ReferenceReaction`
`ReferenceReactionParticipant`
`UniversalReaction`
`Reaction`
`UniversalReactionMatrix`
`ReactionMatrix`
`ComponentIDMapping`
`MemoteTest`
`MemoteResult`
`EscherModule`
`ModelReactionEscherMapping`

Functions#

`dummy_col_f`(→ Mapped[T])
`dummy_f`(args, *kwargs)
`hybrid_property`(f)

Module Contents#

biggr.models.OBJECT_CACHE#

biggr.models.LAZY_LOADING = True#

biggr.models.T#

class biggr.models.Mapped#

Bases: Generic[T]

Makes it easier to reuse cobradb/sqlalchemy code.

class biggr.models.PropertyNotLoaded#

class biggr.models.ORMDummy(*args, **kwargs)#

args = ()#

kwargs#

biggr.models.ForeignKey#

biggr.models.UniqueConstraint#

biggr.models.Enum#

biggr.models.dummy_col_f(*args, obj_type: Type[T] = str, **kwargs) → Mapped[T]#

biggr.models.dummy_f(*args, **kwargs)#

biggr.models.hybrid_property(f)#

biggr.models.mapped_column#

biggr.models.relationship#

biggr.models.String#

biggr.models.DateTime#

biggr.models.HASH_STR_MAX_LEN = 5000#

biggr.models.custom_enums#

biggr.models.COMPOUND_TYPE_TO_SBO#

class biggr.models.DeclarativeMeta#: Bases: type

class biggr.models.DeclarativeBase(**kwargs)#

class biggr.models.Base(**kwargs)#

Bases: DeclarativeBase

classmethod from_dict(d)#

class biggr.models.BiGGBase#

id: Mapped[int]#

bigg_id: Mapped[str]#

class biggr.models.InChI(**kwargs)#

Bases: Base

id: Mapped[int]#

formula: Mapped[str]#

c: Mapped[str | None]#

h: Mapped[str | None]#

q: Mapped[str | None]#

p: Mapped[str | None]#

b: Mapped[str | None]#

t: Mapped[str | None]#

m: Mapped[str | None]#

s: Mapped[str | None]#

key_major: Mapped[str]#

key_minor: Mapped[str]#

key_proton: Mapped[str]#

reference_compounds: Mapped[List[ReferenceCompound]]#

reference_reactive_parts: Mapped[List[ReferenceReactivePart]]#

key()#

n_protons()#

charge()#

class biggr.models.TaxonomicRank(**kwargs)#

Bases: Base

id: Mapped[int]#

name: Mapped[str]#

taxons: Mapped[List[Taxon]]#

class biggr.models.Taxon(**kwargs)#

Bases: Base

id: Mapped[int]#

parent_id: Mapped[int | None]#

parent: Mapped[Taxon | None]#

children: Mapped[List[Taxon]]#

name: Mapped[str | None]#

rank_id: Mapped[int]#

rank: Mapped[TaxonomicRank]#

genomes: Mapped[List[Genome]]#

models: Mapped[List[Model]]#

collections: Mapped[List[ModelCollection]]#

class biggr.models.ModelCollection(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

oneliner: Mapped[str | None]#

description: Mapped[str | None]#

publication_id: Mapped[int | None]#

publication: Mapped[Publication | None]#

taxon_id: Mapped[int | None]#

taxon: Mapped[Taxon | None]#

models: Mapped[List[Model]]#

collection_namespace_components: Mapped[List[Component]]#

collection_namespace_universal_components: Mapped[List[UniversalComponent]]#

collection_namespace_universal_reactions: Mapped[List[UniversalReaction]]#

collection_namespace_reactions: Mapped[List[Reaction]]#

class biggr.models.Genome(**kwargs)#

Bases: Base

id: Mapped[int]#

accession_type: Mapped[str]#

accession_value: Mapped[str]#

organism: Mapped[str | None]#

taxon_id: Mapped[int | None]#

taxon: Mapped[Taxon | None]#

strain: Mapped[str | None]#

ncbi_assembly_id: Mapped[str | None]#

chromosomes: Mapped[List[Chromosome]]#

models: Mapped[List[Model]]#

class biggr.models.Chromosome(**kwargs)#

Bases: Base

id: Mapped[int]#

ncbi_accession: Mapped[str]#

genome_id: Mapped[int]#

genome: Mapped[Genome]#

genome_regions: Mapped[List[GenomeRegion]]#

class biggr.models.GenomeRegion(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

chromosome_id: Mapped[int | None]#

chromosome: Mapped[Chromosome | None]#

leftpos: Mapped[int | None]#

rightpos: Mapped[int | None]#

strand: Mapped[str | None]#

type: Mapped[str]#

dna_sequence: Mapped[str | None]#

protein_sequence: Mapped[str | None]#

class biggr.models.ReferenceCompound(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

name: Mapped[str]#

html_name: Mapped[str | None]#

compound_type#

charge: Mapped[str | None]#

formula: Mapped[str | None]#

inchi_id: Mapped[int | None]#

inchi: Mapped[InChI | None]#

reactive_part_matrix: Mapped[List[ReferenceReactivePartMatrix]]#

reaction_participants: Mapped[List[ReferenceReactionParticipant]]#

reference_mappings: Mapped[List[ComponentReferenceMapping]]#

annotation_mappings: Mapped[List[ReferenceCompoundAnnotationMapping]]#

get_sbo()#

class biggr.models.UniversalComponent(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

default_component_id: Mapped[int | None]#

default_component: Mapped[Component | None]#

allow_flexible_variants: Mapped[bool]#

name: Mapped[str | None]#

components: Mapped[List[Component]]#

reference_mapping: Mapped[UniversalComponentReferenceMapping]#

collection_id: Mapped[int | None]#

collection: Mapped[ModelCollection | None]#

universal_compartmentalized_components: Mapped[List[UniversalCompartmentalizedComponent]]#

old_bigg_ids: Mapped[List[ComponentIDMapping]]#

reference_mappings: Mapped[List[ComponentReferenceMapping]]#

class biggr.models.Component(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

universal_component_id: Mapped[int]#

universal_component: Mapped[UniversalComponent]#

name: Mapped[str | None]#

formula: Mapped[str | None]#

charge: Mapped[int]#

variant: Mapped[int]#

collection_id: Mapped[int | None]#

collection: Mapped[ModelCollection | None]#

compartmentalized_components: Mapped[List[CompartmentalizedComponent]]#

reference_mappings: Mapped[List[ComponentReferenceMapping]]#

annotation_mappings: Mapped[List[ComponentAnnotationMapping]]#

static charge_to_string(coefficient)#

class biggr.models.ComponentReferenceMapping(**kwargs)#

Bases: Base

id: Mapped[int]#

component_id: Mapped[int]#

component: Mapped[Component]#

universal_component_id: Mapped[int]#

universal_component: Mapped[UniversalComponent]#

reference_compound_id: Mapped[int]#

reference_compound: Mapped[ReferenceCompound]#

reference_n: Mapped[int | None]#

reference_formula_delta: Mapped[str | None]#

universal_component_reference_mapping: Mapped[UniversalComponentReferenceMapping | None]#

class biggr.models.UniversalComponentReferenceMapping(**kwargs)#

Bases: Base

id: Mapped[int]#

universal_component: Mapped[UniversalComponent]#

mapping_id: Mapped[int]#

mapping: Mapped[ComponentReferenceMapping]#

class biggr.models.DataSource(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

name: Mapped[str | None]#

url_prefix: Mapped[str | None]#

synonyms: Mapped[List[Synonym]]#

annotations: Mapped[List[Annotation]]#

annotation_links: Mapped[List[AnnotationLink]]#

class biggr.models.Annotation(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

type#

default_data_source_id: Mapped[int]#

default_data_source: Mapped[DataSource]#

is_obsolete: Mapped[bool]#

properties: Mapped[List[AnnotationProperty]]#

links: Mapped[List[AnnotationLink]]#

component_mappings: Mapped[List[ComponentAnnotationMapping]]#

reaction_mappings: Mapped[List[ReactionAnnotationMapping]]#

reference_compound_mappings: Mapped[List[ReferenceCompoundAnnotationMapping]]#

reference_reaction_mappings: Mapped[List[ReferenceReactionAnnotationMapping]]#

class biggr.models.AnnotationProperty(**kwargs)#

Bases: Base

id: Mapped[int]#

key: Mapped[str]#

value_str: Mapped[str | None]#

value_int: Mapped[int | None]#

value_float: Mapped[float | None]#

type#

annotation_id: Mapped[int]#

annotation: Mapped[Annotation]#

value()#

class biggr.models.AnnotationLink(**kwargs)#

Bases: Base

id: Mapped[int]#

identifier: Mapped[str]#

data_source_id: Mapped[int]#

data_source: Mapped[DataSource]#

annotation_id: Mapped[int]#

annotation: Mapped[Annotation]#

class biggr.models.ComponentAnnotationMapping(**kwargs)#

Bases: Base

id: Mapped[int]#

component_id: Mapped[int]#

component: Mapped[Component]#

annotation_id: Mapped[int]#

annotation: Mapped[Annotation]#

reference_match: Mapped[bool]#

bigg_id_match: Mapped[bool | None]#

inchi_match: Mapped[bool | None]#

class biggr.models.ReactionAnnotationMapping(**kwargs)#

Bases: Base

id: Mapped[int]#

reaction_id: Mapped[int]#

reaction: Mapped[Reaction]#

annotation_id: Mapped[int]#

annotation: Mapped[Annotation]#

bigg_id_match: Mapped[bool | None]#

pattern_match: Mapped[bool | None]#

class biggr.models.ReferenceCompoundAnnotationMapping(**kwargs)#

Bases: Base

id: Mapped[int]#

reference_compound_id: Mapped[int]#

reference_compound: Mapped[ReferenceCompound]#

annotation_id: Mapped[int]#

annotation: Mapped[Annotation]#

class biggr.models.ReferenceReactionAnnotationMapping(**kwargs)#

Bases: Base

id: Mapped[int]#

reference_reaction_id: Mapped[int]#

reference_reaction: Mapped[ReferenceReaction]#

annotation_id: Mapped[int]#

annotation: Mapped[Annotation]#

class biggr.models.Synonym(**kwargs)#

Bases: Base

id: Mapped[int]#

ome_id: Mapped[int]#

synonym: Mapped[str]#

type#

data_source_id: Mapped[int]#

data_source: Mapped[DataSource]#

class biggr.models.Publication(**kwargs)#

Bases: Base

id: Mapped[int]#

reference_type#

reference_id: Mapped[str]#

publication_models: Mapped[List[PublicationModel]]#

collections: Mapped[List[ModelCollection]]#

class biggr.models.PublicationModel(**kwargs)#

Bases: Base

model_id: Mapped[int]#

model: Mapped[Model]#

publication_id: Mapped[int]#

publication: Mapped[Publication]#

class biggr.models.OldIDSynonym(**kwargs)#

Bases: Base

id: Mapped[int]#

type#

synonym_id: Mapped[int]#

ome_id: Mapped[int]#

class biggr.models.GenomeRegionMap(**kwargs)#

Bases: Base

genome_region_id_1: Mapped[int]#

genome_region_1: Mapped[GenomeRegion]#

genome_region_id_2: Mapped[int]#

genome_region_2: Mapped[GenomeRegion]#

distance: Mapped[int]#

class biggr.models.DeprecatedID(**kwargs)#

Bases: Base

id: Mapped[int]#

type#

deprecated_id: Mapped[str]#

ome_id: Mapped[int]#

class biggr.models.Model(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

collection_id: Mapped[int]#

collection: Mapped[ModelCollection]#

base_filename: Mapped[str | None]#

genome_id: Mapped[int]#

genome: Mapped[Genome]#

organism: Mapped[str | None]#

taxon_id: Mapped[int | None]#

taxon: Mapped[Taxon | None]#

published_filename: Mapped[str | None]#

date_modified: Mapped[datetime.datetime]#

model_genes: Mapped[List[ModelGene]]#

model_reactions: Mapped[List[ModelReaction]]#

model_compartmentalized_components: Mapped[List[ModelCompartmentalizedComponent]]#

model_count: Mapped[ModelCount | None]#

publication_models: Mapped[List[PublicationModel]]#

escher_maps: Mapped[List[EscherMap]]#

memote_results: Mapped[List[MemoteResult]]#

class biggr.models.ModelGene(**kwargs)#

Bases: Base

id: Mapped[int]#

model_id: Mapped[int]#

model: Mapped[Model]#

gene_id: Mapped[int]#

gene: Mapped[Gene]#

reaction_matrix: Mapped[List[GeneReactionMatrix]]#

memote_results: Mapped[List[MemoteResult]]#

class biggr.models.ModelReaction(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

id_in_original_model: Mapped[str]#

reaction_id: Mapped[int]#

reaction: Mapped[Reaction]#

reversed: Mapped[bool]#

model_id: Mapped[int]#

model: Mapped[Model]#

copy_number: Mapped[int]#

objective_coefficient: Mapped[float]#

lower_bound: Mapped[float]#

upper_bound: Mapped[float]#

gene_reaction_rule: Mapped[str]#

original_gene_reaction_rule: Mapped[str | None]#

subsystem: Mapped[str | None]#

reaction_matrix: Mapped[List[GeneReactionMatrix]]#

memote_results: Mapped[List[MemoteResult]]#

escher_mappings: Mapped[List[ModelReactionEscherMapping]]#

static create_id(model_id, universal_reaction_id, copy_number)#

static interpret_id(bigg_id)#

class biggr.models.GeneReactionMatrix(**kwargs)#

Bases: Base

id: Mapped[int]#

model_gene_id: Mapped[int]#

model_gene: Mapped[ModelGene]#

model_reaction_id: Mapped[int]#

model_reaction: Mapped[ModelReaction]#

class biggr.models.UniversalCompartmentalizedComponent(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

universal_component_id: Mapped[int]#

universal_component: Mapped[UniversalComponent]#

compartment_id: Mapped[int]#

compartment: Mapped[Compartment]#

compartmentalized_components: Mapped[List[CompartmentalizedComponent]]#

matrix: Mapped[List[UniversalReactionMatrix]]#

class biggr.models.CompartmentalizedComponent(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

component_id: Mapped[int]#

component: Mapped[Component]#

compartment_id: Mapped[int]#

compartment: Mapped[Compartment]#

universal_compartmentalized_component_id: Mapped[int]#

universal_compartmentalized_component: Mapped[UniversalCompartmentalizedComponent]#

model_compartmentalized_components: Mapped[List[ModelCompartmentalizedComponent]]#

matrix: Mapped[List[ReactionMatrix]]#

class biggr.models.ModelCompartmentalizedComponent(**kwargs)#

Bases: Base

id: Mapped[int]#

bigg_id: Mapped[str]#

id_in_original_model: Mapped[str]#

model_id: Mapped[int]#

model: Mapped[Model]#

compartmentalized_component_id: Mapped[int]#

compartmentalized_component: Mapped[CompartmentalizedComponent]#

memote_results: Mapped[List[MemoteResult]]#

class biggr.models.Compartment(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

name: Mapped[str]#

universal_compartmentalized_components: Mapped[List[UniversalCompartmentalizedComponent]]#

compartmentalized_components: Mapped[List[CompartmentalizedComponent]]#

class biggr.models.EscherMap(**kwargs)#

Bases: Base

id: Mapped[int]#

map_name: Mapped[str]#

map_data: Mapped[str]#

model_id: Mapped[int]#

model: Mapped[Model]#

priority: Mapped[int]#

matrix: Mapped[List[EscherMapMatrix]]#

class biggr.models.EscherMapMatrix(**kwargs)#

Bases: Base

id: Mapped[int]#

ome_id: Mapped[int]#

type#

escher_map_id: Mapped[int]#

escher_map: Mapped[EscherMap]#

escher_map_element_id: Mapped[str]#

class biggr.models.ModelCount(**kwargs)#

Bases: Base

id: Mapped[int]#

model_id: Mapped[int]#

model: Mapped[Model]#

reaction_count: Mapped[int]#

gene_count: Mapped[int]#

metabolite_count: Mapped[int]#

class biggr.models.Gene(**kwargs)#

Bases: GenomeRegion

id: Mapped[int]#

name: Mapped[str | None]#

locus_tag: Mapped[str | None]#

mapped_to_genbank: Mapped[bool]#

alternative_transcript_id: Mapped[int | None]#

alternative_transcript_of: Mapped[Gene | None]#

model_genes: Mapped[List[ModelGene]]#

class biggr.models.ReferenceReactivePart(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

name: Mapped[str]#

html_name: Mapped[str | None]#

formula: Mapped[str | None]#

charge: Mapped[str | None]#

inchi_id: Mapped[int | None]#

inchi: Mapped[InChI | None]#

matrix: Mapped[List[ReferenceReactivePartMatrix]]#

class biggr.models.ReferenceReactivePartMatrix(**kwargs)#

Bases: Base

id: Mapped[int]#

compound_id: Mapped[int]#

compound: Mapped[ReferenceCompound]#

reactive_part_id: Mapped[int]#

reactive_part: Mapped[ReferenceReactivePart]#

class biggr.models.ReferenceReaction(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

name: Mapped[str | None]#

equation: Mapped[str | None]#

hash: Mapped[str]#

reaction_participants: Mapped[List[ReferenceReactionParticipant]]#

universal_reactions: Mapped[List[UniversalReaction]]#

annotation_mappings: Mapped[List[ReferenceReactionAnnotationMapping]]#

static generate_hash(participants, pattern=False)#

update_hash()#

class biggr.models.ReferenceReactionParticipant(**kwargs)#

Bases: Base

id: Mapped[int]#

reaction_id: Mapped[int]#

reaction: Mapped[ReferenceReaction]#

compound_id: Mapped[int]#

compound: Mapped[ReferenceCompound]#

side#

coefficient: Mapped[str]#

compartment: Mapped[str]#

universal_reaction_matrix: Mapped[List[UniversalReactionMatrix]]#

class biggr.models.UniversalReaction(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

hash: Mapped[str]#

name: Mapped[str | None]#

is_exchange: Mapped[bool]#

is_transport: Mapped[bool]#

is_pseudo: Mapped[bool]#

collection_id: Mapped[int | None]#

collection: Mapped[ModelCollection | None]#

reference_id: Mapped[int | None]#

reference: Mapped[ReferenceReaction | None]#

reactions: Mapped[List[Reaction]]#

matrix: Mapped[List[UniversalReactionMatrix]]#

get_sbo(reference)#

static generate_hash(components)#

class biggr.models.Reaction(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

hash: Mapped[str]#

collection_id: Mapped[int | None]#

collection: Mapped[ModelCollection | None]#

copy_number: Mapped[int]#

universal_reaction_id: Mapped[int]#

universal_reaction: Mapped[UniversalReaction]#

matrix: Mapped[List[ReactionMatrix]]#

model_reactions: Mapped[List[ModelReaction]]#

annotation_mappings: Mapped[List[ReactionAnnotationMapping]]#

static create_id(universal_id, copy_number)#

static coefficient_to_string(coefficient)#

static generate_hash(components)#

class biggr.models.UniversalReactionMatrix(**kwargs)#

Bases: Base

id: Mapped[int]#

universal_reaction_id: Mapped[int | None]#

universal_reaction: Mapped[UniversalReaction | None]#

reference_reaction_participant_id: Mapped[int | None]#

reference_reaction_participant: Mapped[ReferenceReactionParticipant | None]#

universal_compartmentalized_component_id: Mapped[int]#

universal_compartmentalized_component: Mapped[UniversalCompartmentalizedComponent]#

coefficient: Mapped[float]#

reaction_matrices: Mapped[List[ReactionMatrix]]#

class biggr.models.ReactionMatrix(**kwargs)#

Bases: Base

id: Mapped[int]#

reaction_id: Mapped[int]#

reaction: Mapped[Reaction]#

universal_reaction_matrix_id: Mapped[int]#

universal_reaction_matrix: Mapped[UniversalReactionMatrix]#

compartmentalized_component_id: Mapped[int]#

compartmentalized_component: Mapped[CompartmentalizedComponent]#

class biggr.models.ComponentIDMapping(**kwargs)#

Bases: Base

old_bigg_id: Mapped[str]#

new_id: Mapped[int]#

new_universal_component: Mapped[UniversalComponent]#

class biggr.models.MemoteTest(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

name: Mapped[str]#

summary: Mapped[str | None]#

format_type: Mapped[str]#

invert: Mapped[bool | None]#

invert_result: Mapped[bool | None]#

field: Mapped[str | None]#

results: Mapped[List[MemoteResult]]#

class biggr.models.MemoteResult(**kwargs)#

Bases: Base

id: Mapped[int]#

model_id: Mapped[int]#

model: Mapped[Model]#

test_id: Mapped[int]#

test: Mapped[MemoteTest]#

model_reaction_id: Mapped[int | None]#

model_reaction: Mapped[ModelReaction | None]#

model_compartmentalized_component_id: Mapped[int | None]#

model_compartmentalized_component: Mapped[ModelCompartmentalizedComponent | None]#

model_gene_id: Mapped[int | None]#

model_gene: Mapped[ModelGene | None]#

message: Mapped[str | None]#

data: Mapped[float | None]#

duration: Mapped[float | None]#

metric: Mapped[float | None]#

result#

data_count: Mapped[int | None]#

class biggr.models.EscherModule(**kwargs)#

Bases: Base, BiGGBase

id: Mapped[int]#

bigg_id: Mapped[str]#

name: Mapped[str]#

description: Mapped[str]#

model_reaction_mappings: Mapped[List[ModelReactionEscherMapping]]#

class biggr.models.ModelReactionEscherMapping(**kwargs)#

Bases: Base

id: Mapped[int]#

model_reaction_id: Mapped[int]#

model_reaction: Mapped[ModelReaction]#

escher_module_id: Mapped[int]#

escher_module: Mapped[EscherModule]#