Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V A accession_type (bigg.models.Genome attribute) accession_value (bigg.models.Genome attribute) allow_flexible_variants (bigg.models.UniversalComponent attribute) alternative_transcript_id (bigg.models.Gene attribute) alternative_transcript_of (bigg.models.Gene attribute) annotation (bigg.models.AnnotationLink attribute) (bigg.models.AnnotationProperty attribute) (bigg.models.ComponentAnnotationMapping attribute) (bigg.models.ReactionAnnotationMapping attribute) (bigg.models.ReferenceCompoundAnnotationMapping attribute) (bigg.models.ReferenceReactionAnnotationMapping attribute) Annotation (class in bigg.models) annotation_id (bigg.models.AnnotationLink attribute) (bigg.models.AnnotationProperty attribute) (bigg.models.ComponentAnnotationMapping attribute) (bigg.models.ReactionAnnotationMapping attribute) (bigg.models.ReferenceCompoundAnnotationMapping attribute) (bigg.models.ReferenceReactionAnnotationMapping attribute) annotation_links (bigg.models.DataSource attribute) annotation_mappings (bigg.models.Component attribute) (bigg.models.Reaction attribute) (bigg.models.ReferenceCompound attribute) (bigg.models.ReferenceReaction attribute) AnnotationLink (class in bigg.models) AnnotationProperty (class in bigg.models) annotations (bigg.models.DataSource attribute) API_URL (in module bigg.objects) args (bigg.models.ORMDummy attribute) B b (bigg.models.InChI attribute) Base (class in bigg.models) base_filename (bigg.models.Model attribute) bigg module bigg.cobra module bigg.models module bigg.objects module bigg_id (bigg.models.Annotation attribute) (bigg.models.BiGGBase attribute) (bigg.models.Compartment attribute) (bigg.models.CompartmentalizedComponent attribute) (bigg.models.Component attribute) (bigg.models.DataSource attribute) (bigg.models.EscherModule attribute) (bigg.models.GenomeRegion attribute) (bigg.models.MemoteTest attribute) (bigg.models.Model attribute) (bigg.models.ModelCollection attribute) (bigg.models.ModelCompartmentalizedComponent attribute) (bigg.models.ModelReaction attribute) (bigg.models.Reaction attribute) (bigg.models.ReferenceCompound attribute) (bigg.models.ReferenceReaction attribute) (bigg.models.ReferenceReactivePart attribute) (bigg.models.UniversalCompartmentalizedComponent attribute) (bigg.models.UniversalComponent attribute) (bigg.models.UniversalReaction attribute) bigg_id_match (bigg.models.ComponentAnnotationMapping attribute) (bigg.models.ReactionAnnotationMapping attribute) BiGGBase (class in bigg.models) C c (bigg.models.InChI attribute) charge (bigg.models.Component attribute) (bigg.models.ReferenceCompound attribute) (bigg.models.ReferenceReactivePart attribute) charge() (bigg.models.InChI method) charge_to_string() (bigg.models.Component static method) children (bigg.models.Taxon attribute) chromosome (bigg.models.GenomeRegion attribute) Chromosome (class in bigg.models) chromosome_id (bigg.models.GenomeRegion attribute) chromosomes (bigg.models.Genome attribute) coefficient (bigg.models.ReferenceReactionParticipant attribute) (bigg.models.UniversalReactionMatrix attribute) coefficient_to_string() (bigg.models.Reaction static method) collection (bigg.models.Component attribute) (bigg.models.Model attribute) (bigg.models.Reaction attribute) (bigg.models.UniversalComponent attribute) (bigg.models.UniversalReaction attribute) collection_id (bigg.models.Component attribute) (bigg.models.Model attribute) (bigg.models.Reaction attribute) (bigg.models.UniversalComponent attribute) (bigg.models.UniversalReaction attribute) collection_namespace_components (bigg.models.ModelCollection attribute) collection_namespace_reactions (bigg.models.ModelCollection attribute) collection_namespace_universal_components (bigg.models.ModelCollection attribute) collection_namespace_universal_reactions (bigg.models.ModelCollection attribute) collections (bigg.models.Publication attribute) (bigg.models.Taxon attribute) compartment (bigg.models.CompartmentalizedComponent attribute) (bigg.models.ReferenceReactionParticipant attribute) (bigg.models.UniversalCompartmentalizedComponent attribute) Compartment (class in bigg.models) compartment_id (bigg.models.CompartmentalizedComponent attribute) (bigg.models.UniversalCompartmentalizedComponent attribute) compartmentalized_component (bigg.models.ModelCompartmentalizedComponent attribute) (bigg.models.ReactionMatrix attribute) compartmentalized_component_id (bigg.models.ModelCompartmentalizedComponent attribute) (bigg.models.ReactionMatrix attribute) compartmentalized_components (bigg.models.Compartment attribute) (bigg.models.Component attribute) (bigg.models.UniversalCompartmentalizedComponent attribute) CompartmentalizedComponent (class in bigg.models) component (bigg.models.CompartmentalizedComponent attribute) (bigg.models.ComponentAnnotationMapping attribute) (bigg.models.ComponentReferenceMapping attribute) Component (class in bigg.models) component_id (bigg.models.CompartmentalizedComponent attribute) (bigg.models.ComponentAnnotationMapping attribute) (bigg.models.ComponentReferenceMapping attribute) component_mappings (bigg.models.Annotation attribute) ComponentAnnotationMapping (class in bigg.models) ComponentIDMapping (class in bigg.models) ComponentReferenceMapping (class in bigg.models) components (bigg.models.UniversalComponent attribute) compound (bigg.models.ReferenceReactionParticipant attribute) (bigg.models.ReferenceReactivePartMatrix attribute) compound_id (bigg.models.ReferenceReactionParticipant attribute) (bigg.models.ReferenceReactivePartMatrix attribute) compound_type (bigg.models.ReferenceCompound attribute) COMPOUND_TYPE_TO_SBO (in module bigg.models) copy_number (bigg.models.ModelReaction attribute) (bigg.models.Reaction attribute) create_id() (bigg.models.ModelReaction static method) (bigg.models.Reaction static method) custom_enums (in module bigg.models) D data (bigg.models.MemoteResult attribute) data_count (bigg.models.MemoteResult attribute) data_source (bigg.models.AnnotationLink attribute) (bigg.models.Synonym attribute) data_source_id (bigg.models.AnnotationLink attribute) (bigg.models.Synonym attribute) DataSource (class in bigg.models) date_modified (bigg.models.Model attribute) DateTime (in module bigg.models) DeclarativeBase (class in bigg.models) DeclarativeMeta (class in bigg.models) default_component (bigg.models.UniversalComponent attribute) default_component_id (bigg.models.UniversalComponent attribute) default_data_source (bigg.models.Annotation attribute) default_data_source_id (bigg.models.Annotation attribute) deprecated_id (bigg.models.DeprecatedID attribute) DeprecatedID (class in bigg.models) description (bigg.models.EscherModule attribute) (bigg.models.ModelCollection attribute) distance (bigg.models.GenomeRegionMap attribute) dna_sequence (bigg.models.GenomeRegion attribute) dummy_col_f() (in module bigg.models) dummy_f() (in module bigg.models) duration (bigg.models.MemoteResult attribute) E Enum (in module bigg.models) equation (bigg.models.ReferenceReaction attribute) escher_map (bigg.models.EscherMapMatrix attribute) escher_map_element_id (bigg.models.EscherMapMatrix attribute) escher_map_id (bigg.models.EscherMapMatrix attribute) escher_mappings (bigg.models.ModelReaction attribute) escher_maps (bigg.models.Model attribute) escher_module (bigg.models.ModelReactionEscherMapping attribute) escher_module_id (bigg.models.ModelReactionEscherMapping attribute) EscherMap (class in bigg.models) EscherMapMatrix (class in bigg.models) EscherModule (class in bigg.models) F field (bigg.models.MemoteTest attribute) find_metabolite() (in module bigg.cobra) ForeignKey (in module bigg.models) format_type (bigg.models.MemoteTest attribute) formula (bigg.models.Component attribute) (bigg.models.InChI attribute) (bigg.models.ReferenceCompound attribute) (bigg.models.ReferenceReactivePart attribute) from_dict() (bigg.models.Base class method) G gene (bigg.models.ModelGene attribute) Gene (class in bigg.models) gene_count (bigg.models.ModelCount attribute) gene_id (bigg.models.ModelGene attribute) gene_reaction_rule (bigg.models.ModelReaction attribute) generate_hash() (bigg.models.Reaction static method) (bigg.models.ReferenceReaction static method) (bigg.models.UniversalReaction static method) GeneReactionMatrix (class in bigg.models) genome (bigg.models.Chromosome attribute) (bigg.models.Model attribute) Genome (class in bigg.models) genome_id (bigg.models.Chromosome attribute) (bigg.models.Model attribute) genome_region_1 (bigg.models.GenomeRegionMap attribute) genome_region_2 (bigg.models.GenomeRegionMap attribute) genome_region_id_1 (bigg.models.GenomeRegionMap attribute) genome_region_id_2 (bigg.models.GenomeRegionMap attribute) genome_regions (bigg.models.Chromosome attribute) GenomeRegion (class in bigg.models) GenomeRegionMap (class in bigg.models) genomes (bigg.models.Taxon attribute) get() (in module bigg.objects) get_metabolites_by_identifiers() (in module bigg.objects) get_raw() (in module bigg.objects) get_sbo() (bigg.models.ReferenceCompound method) (bigg.models.UniversalReaction method) H h (bigg.models.InChI attribute) hash (bigg.models.Reaction attribute) (bigg.models.ReferenceReaction attribute) (bigg.models.UniversalReaction attribute) HASH_STR_MAX_LEN (in module bigg.models) html_name (bigg.models.ReferenceCompound attribute) (bigg.models.ReferenceReactivePart attribute) hybrid_property() (in module bigg.models) I id (bigg.models.Annotation attribute) (bigg.models.AnnotationLink attribute) (bigg.models.AnnotationProperty attribute) (bigg.models.BiGGBase attribute) (bigg.models.Chromosome attribute) (bigg.models.Compartment attribute) (bigg.models.CompartmentalizedComponent attribute) (bigg.models.Component attribute) (bigg.models.ComponentAnnotationMapping attribute) (bigg.models.ComponentReferenceMapping attribute) (bigg.models.DataSource attribute) (bigg.models.DeprecatedID attribute) (bigg.models.EscherMap attribute) (bigg.models.EscherMapMatrix attribute) (bigg.models.EscherModule attribute) (bigg.models.Gene attribute) (bigg.models.GeneReactionMatrix attribute) (bigg.models.Genome attribute) (bigg.models.GenomeRegion attribute) (bigg.models.InChI attribute) (bigg.models.MemoteResult attribute) (bigg.models.MemoteTest attribute) (bigg.models.Model attribute) (bigg.models.ModelCollection attribute) (bigg.models.ModelCompartmentalizedComponent attribute) (bigg.models.ModelCount attribute) (bigg.models.ModelGene attribute) (bigg.models.ModelReaction attribute) (bigg.models.ModelReactionEscherMapping attribute) (bigg.models.OldIDSynonym attribute) (bigg.models.Publication attribute) (bigg.models.Reaction attribute) (bigg.models.ReactionAnnotationMapping attribute) (bigg.models.ReactionMatrix attribute) (bigg.models.ReferenceCompound attribute) (bigg.models.ReferenceCompoundAnnotationMapping attribute) (bigg.models.ReferenceReaction attribute) (bigg.models.ReferenceReactionAnnotationMapping attribute) (bigg.models.ReferenceReactionParticipant attribute) (bigg.models.ReferenceReactivePart attribute) (bigg.models.ReferenceReactivePartMatrix attribute) (bigg.models.Synonym attribute) (bigg.models.Taxon attribute) (bigg.models.TaxonomicRank attribute) (bigg.models.UniversalCompartmentalizedComponent attribute) (bigg.models.UniversalComponent attribute) (bigg.models.UniversalComponentReferenceMapping attribute) (bigg.models.UniversalReaction attribute) (bigg.models.UniversalReactionMatrix attribute) id_in_original_model (bigg.models.ModelCompartmentalizedComponent attribute) (bigg.models.ModelReaction attribute) identifier (bigg.models.AnnotationLink attribute) IDENTIFIERS_API_URL (in module bigg.objects) inchi (bigg.models.ReferenceCompound attribute) (bigg.models.ReferenceReactivePart attribute) InChI (class in bigg.models) inchi_id (bigg.models.ReferenceCompound attribute) (bigg.models.ReferenceReactivePart attribute) inchi_match (bigg.models.ComponentAnnotationMapping attribute) interpret_id() (bigg.models.ModelReaction static method) invert (bigg.models.MemoteTest attribute) invert_result (bigg.models.MemoteTest attribute) is_exchange (bigg.models.UniversalReaction attribute) is_obsolete (bigg.models.Annotation attribute) is_pseudo (bigg.models.UniversalReaction attribute) is_transport (bigg.models.UniversalReaction attribute) K key (bigg.models.AnnotationProperty attribute) key() (bigg.models.InChI method) key_major (bigg.models.InChI attribute) key_minor (bigg.models.InChI attribute) key_proton (bigg.models.InChI attribute) kwargs (bigg.models.ORMDummy attribute) L LAZY_LOADING (in module bigg.models) leftpos (bigg.models.GenomeRegion attribute) links (bigg.models.Annotation attribute) locus_tag (bigg.models.Gene attribute) lower_bound (bigg.models.ModelReaction attribute) M m (bigg.models.InChI attribute) map_data (bigg.models.EscherMap attribute) map_name (bigg.models.EscherMap attribute) Mapped (class in bigg.models) mapped_column (in module bigg.models) mapped_to_genbank (bigg.models.Gene attribute) mapping (bigg.models.UniversalComponentReferenceMapping attribute) mapping_id (bigg.models.UniversalComponentReferenceMapping attribute) matrix (bigg.models.CompartmentalizedComponent attribute) (bigg.models.EscherMap attribute) (bigg.models.Reaction attribute) (bigg.models.ReferenceReactivePart attribute) (bigg.models.UniversalCompartmentalizedComponent attribute) (bigg.models.UniversalReaction attribute) memote_results (bigg.models.Model attribute) (bigg.models.ModelCompartmentalizedComponent attribute) (bigg.models.ModelGene attribute) (bigg.models.ModelReaction attribute) MemoteResult (class in bigg.models) MemoteTest (class in bigg.models) message (bigg.models.MemoteResult attribute) METABOLITE_ANNOTATION_PRIORITY (in module bigg.cobra) metabolite_count (bigg.models.ModelCount attribute) metric (bigg.models.MemoteResult attribute) model (bigg.models.EscherMap attribute) (bigg.models.MemoteResult attribute) (bigg.models.ModelCompartmentalizedComponent attribute) (bigg.models.ModelCount attribute) (bigg.models.ModelGene attribute) (bigg.models.ModelReaction attribute) (bigg.models.PublicationModel attribute) Model (class in bigg.models) model_compartmentalized_component (bigg.models.MemoteResult attribute) model_compartmentalized_component_id (bigg.models.MemoteResult attribute) model_compartmentalized_components (bigg.models.CompartmentalizedComponent attribute) (bigg.models.Model attribute) model_count (bigg.models.Model attribute) model_gene (bigg.models.GeneReactionMatrix attribute) (bigg.models.MemoteResult attribute) model_gene_id (bigg.models.GeneReactionMatrix attribute) (bigg.models.MemoteResult attribute) model_genes (bigg.models.Gene attribute) (bigg.models.Model attribute) model_id (bigg.models.EscherMap attribute) (bigg.models.MemoteResult attribute) (bigg.models.ModelCompartmentalizedComponent attribute) (bigg.models.ModelCount attribute) (bigg.models.ModelGene attribute) (bigg.models.ModelReaction attribute) (bigg.models.PublicationModel attribute) model_reaction (bigg.models.GeneReactionMatrix attribute) (bigg.models.MemoteResult attribute) (bigg.models.ModelReactionEscherMapping attribute) model_reaction_id (bigg.models.GeneReactionMatrix attribute) (bigg.models.MemoteResult attribute) (bigg.models.ModelReactionEscherMapping attribute) model_reaction_mappings (bigg.models.EscherModule attribute) model_reactions (bigg.models.Model attribute) (bigg.models.Reaction attribute) ModelCollection (class in bigg.models) ModelCompartmentalizedComponent (class in bigg.models) ModelCount (class in bigg.models) ModelGene (class in bigg.models) ModelReaction (class in bigg.models) ModelReactionEscherMapping (class in bigg.models) models (bigg.models.Genome attribute) (bigg.models.ModelCollection attribute) (bigg.models.Taxon attribute) module bigg bigg.cobra bigg.models bigg.objects N n_protons() (bigg.models.InChI method) name (bigg.models.Compartment attribute) (bigg.models.Component attribute) (bigg.models.DataSource attribute) (bigg.models.EscherModule attribute) (bigg.models.Gene attribute) (bigg.models.MemoteTest attribute) (bigg.models.ReferenceCompound attribute) (bigg.models.ReferenceReaction attribute) (bigg.models.ReferenceReactivePart attribute) (bigg.models.Taxon attribute) (bigg.models.TaxonomicRank attribute) (bigg.models.UniversalComponent attribute) (bigg.models.UniversalReaction attribute) ncbi_accession (bigg.models.Chromosome attribute) ncbi_assembly_id (bigg.models.Genome attribute) new_id (bigg.models.ComponentIDMapping attribute) new_universal_component (bigg.models.ComponentIDMapping attribute) O OBJECT_CACHE (in module bigg.models) objective_coefficient (bigg.models.ModelReaction attribute) OBJECTS_API_URL (in module bigg.objects) old_bigg_id (bigg.models.ComponentIDMapping attribute) old_bigg_ids (bigg.models.UniversalComponent attribute) OldIDSynonym (class in bigg.models) ome_id (bigg.models.DeprecatedID attribute) (bigg.models.EscherMapMatrix attribute) (bigg.models.OldIDSynonym attribute) (bigg.models.Synonym attribute) oneliner (bigg.models.ModelCollection attribute) organism (bigg.models.Genome attribute) (bigg.models.Model attribute) original_gene_reaction_rule (bigg.models.ModelReaction attribute) ORMDummy (class in bigg.models) P p (bigg.models.InChI attribute) parent (bigg.models.Taxon attribute) parent_id (bigg.models.Taxon attribute) pattern_match (bigg.models.ReactionAnnotationMapping attribute) priority (bigg.models.EscherMap attribute) properties (bigg.models.Annotation attribute) PropertyNotLoaded (class in bigg.models) protein_sequence (bigg.models.GenomeRegion attribute) publication (bigg.models.ModelCollection attribute) (bigg.models.PublicationModel attribute) Publication (class in bigg.models) publication_id (bigg.models.ModelCollection attribute) (bigg.models.PublicationModel attribute) publication_models (bigg.models.Model attribute) (bigg.models.Publication attribute) PublicationModel (class in bigg.models) published_filename (bigg.models.Model attribute) Q q (bigg.models.InChI attribute) R rank (bigg.models.Taxon attribute) rank_id (bigg.models.Taxon attribute) reaction (bigg.models.ModelReaction attribute) (bigg.models.ReactionAnnotationMapping attribute) (bigg.models.ReactionMatrix attribute) (bigg.models.ReferenceReactionParticipant attribute) Reaction (class in bigg.models) reaction_count (bigg.models.ModelCount attribute) reaction_id (bigg.models.ModelReaction attribute) (bigg.models.ReactionAnnotationMapping attribute) (bigg.models.ReactionMatrix attribute) (bigg.models.ReferenceReactionParticipant attribute) reaction_mappings (bigg.models.Annotation attribute) reaction_matrices (bigg.models.UniversalReactionMatrix attribute) reaction_matrix (bigg.models.ModelGene attribute) (bigg.models.ModelReaction attribute) reaction_participants (bigg.models.ReferenceCompound attribute) (bigg.models.ReferenceReaction attribute) ReactionAnnotationMapping (class in bigg.models) ReactionMatrix (class in bigg.models) reactions (bigg.models.UniversalReaction attribute) reactive_part (bigg.models.ReferenceReactivePartMatrix attribute) reactive_part_id (bigg.models.ReferenceReactivePartMatrix attribute) reactive_part_matrix (bigg.models.ReferenceCompound attribute) reference (bigg.models.UniversalReaction attribute) reference_compound (bigg.models.ComponentReferenceMapping attribute) (bigg.models.ReferenceCompoundAnnotationMapping attribute) reference_compound_id (bigg.models.ComponentReferenceMapping attribute) (bigg.models.ReferenceCompoundAnnotationMapping attribute) reference_compound_mappings (bigg.models.Annotation attribute) reference_compounds (bigg.models.InChI attribute) reference_formula_delta (bigg.models.ComponentReferenceMapping attribute) reference_id (bigg.models.Publication attribute) (bigg.models.UniversalReaction attribute) reference_mapping (bigg.models.UniversalComponent attribute) reference_mappings (bigg.models.Component attribute) (bigg.models.ReferenceCompound attribute) (bigg.models.UniversalComponent attribute) reference_match (bigg.models.ComponentAnnotationMapping attribute) reference_n (bigg.models.ComponentReferenceMapping attribute) reference_reaction (bigg.models.ReferenceReactionAnnotationMapping attribute) reference_reaction_id (bigg.models.ReferenceReactionAnnotationMapping attribute) reference_reaction_mappings (bigg.models.Annotation attribute) reference_reaction_participant (bigg.models.UniversalReactionMatrix attribute) reference_reaction_participant_id (bigg.models.UniversalReactionMatrix attribute) reference_reactive_parts (bigg.models.InChI attribute) reference_type (bigg.models.Publication attribute) ReferenceCompound (class in bigg.models) ReferenceCompoundAnnotationMapping (class in bigg.models) ReferenceReaction (class in bigg.models) ReferenceReactionAnnotationMapping (class in bigg.models) ReferenceReactionParticipant (class in bigg.models) ReferenceReactivePart (class in bigg.models) ReferenceReactivePartMatrix (class in bigg.models) relationship (in module bigg.models) result (bigg.models.MemoteResult attribute) results (bigg.models.MemoteTest attribute) reversed (bigg.models.ModelReaction attribute) rightpos (bigg.models.GenomeRegion attribute) S s (bigg.models.InChI attribute) side (bigg.models.ReferenceReactionParticipant attribute) strain (bigg.models.Genome attribute) strand (bigg.models.GenomeRegion attribute) String (in module bigg.models) subsystem (bigg.models.ModelReaction attribute) summary (bigg.models.MemoteTest attribute) synonym (bigg.models.Synonym attribute) Synonym (class in bigg.models) synonym_id (bigg.models.OldIDSynonym attribute) synonyms (bigg.models.DataSource attribute) T t (bigg.models.InChI attribute) T (in module bigg.models) taxon (bigg.models.Genome attribute) (bigg.models.Model attribute) (bigg.models.ModelCollection attribute) Taxon (class in bigg.models) taxon_id (bigg.models.Genome attribute) (bigg.models.Model attribute) (bigg.models.ModelCollection attribute) TaxonomicRank (class in bigg.models) taxons (bigg.models.TaxonomicRank attribute) test (bigg.models.MemoteResult attribute) test_id (bigg.models.MemoteResult attribute) type (bigg.models.Annotation attribute) (bigg.models.AnnotationProperty attribute) (bigg.models.DeprecatedID attribute) (bigg.models.EscherMapMatrix attribute) (bigg.models.GenomeRegion attribute) (bigg.models.OldIDSynonym attribute) (bigg.models.Synonym attribute) U UniqueConstraint (in module bigg.models) universal_compartmentalized_component (bigg.models.CompartmentalizedComponent attribute) (bigg.models.UniversalReactionMatrix attribute) universal_compartmentalized_component_id (bigg.models.CompartmentalizedComponent attribute) (bigg.models.UniversalReactionMatrix attribute) universal_compartmentalized_components (bigg.models.Compartment attribute) (bigg.models.UniversalComponent attribute) universal_component (bigg.models.Component attribute) (bigg.models.ComponentReferenceMapping attribute) (bigg.models.UniversalCompartmentalizedComponent attribute) (bigg.models.UniversalComponentReferenceMapping attribute) universal_component_id (bigg.models.Component attribute) (bigg.models.ComponentReferenceMapping attribute) (bigg.models.UniversalCompartmentalizedComponent attribute) universal_component_reference_mapping (bigg.models.ComponentReferenceMapping attribute) universal_reaction (bigg.models.Reaction attribute) (bigg.models.UniversalReactionMatrix attribute) universal_reaction_id (bigg.models.Reaction attribute) (bigg.models.UniversalReactionMatrix attribute) universal_reaction_matrix (bigg.models.ReactionMatrix attribute) (bigg.models.ReferenceReactionParticipant attribute) universal_reaction_matrix_id (bigg.models.ReactionMatrix attribute) universal_reactions (bigg.models.ReferenceReaction attribute) UniversalCompartmentalizedComponent (class in bigg.models) UniversalComponent (class in bigg.models) UniversalComponentReferenceMapping (class in bigg.models) UniversalReaction (class in bigg.models) UniversalReactionMatrix (class in bigg.models) update_hash() (bigg.models.ReferenceReaction method) update_metabolite() (in module bigg.cobra) upper_bound (bigg.models.ModelReaction attribute) url_prefix (bigg.models.DataSource attribute) V value() (bigg.models.AnnotationProperty method) value_float (bigg.models.AnnotationProperty attribute) value_int (bigg.models.AnnotationProperty attribute) value_str (bigg.models.AnnotationProperty attribute) variant (bigg.models.Component attribute)