Protein Quantifications aggregated from Peptide Quantifications

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Protein Quantifications aggregated from Peptide Quantifications#

Using DirectLFQ#

See GitHub repository DirectLFQ and protein_quant.py script for details. In short:

  • bring the peptide quantifications into a suitable format

  • run DirectLFQ to aggregate peptide to protein quantifications with default parameters

  • filter and reshape the results

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