Files description#
Author: Sebastian Schulz Date: 23 March 2025
Please see this GitHub issue for details on original input files and procedures to modify them: nf-core/rnaseq#1512.
Files were downloaded and modified as detailed in above GitHub issue.
Original files (downloaded from ftp)#
Genome sequence fasta#
Genome annotation gtf (line count: 18024)#
Modified files#
Modified gtf (all empty transcript fields removed -> line count: 13385)#
GCF_000005845.2_ASM584v2_genomic_modified.gtf
Self-generated transcript fasta and genome index (both are outputs from gffread)#
GCF_000005845.2_ASM584v2_modified_transcript.fna GCF_000005845.2_ASM584v2_genomic.fna.fai