biggr_models.queries.genome_queries

Functions

get_genomes_count(session, **kwargs)	Return the number of models in the database.
get_all_genomes(session)	Get all genomes.
get_genomes(session[, page, size, sort_column, ...])
get_genome_and_models(genome_ref_string, session)
get_reactions_for_genome(genome_id, session)	Get all reactions associated with a genome through its models.
get_metabolites_for_genome(genome_id, session)	Get all metabolites associated with a genome through its models.
get_genomes_with_chromosomes(accession_id, session[, ...])

Module Contents

biggr_models.queries.genome_queries.get_genomes_count(session, **kwargs)

Return the number of models in the database.

biggr_models.queries.genome_queries.get_all_genomes(session)

Get all genomes.

biggr_models.queries.genome_queries.get_genomes(session, page=None, size=None, sort_column=None, sort_direction='ascending')

biggr_models.queries.genome_queries.get_genome_and_models(genome_ref_string, session)

biggr_models.queries.genome_queries.get_reactions_for_genome(genome_id, session)

Get all reactions associated with a genome through its models.

biggr_models.queries.genome_queries.get_metabolites_for_genome(genome_id, session)

Get all metabolites associated with a genome through its models.

biggr_models.queries.genome_queries.get_genomes_with_chromosomes(accession_id, session, gene_id_filter=None, include_metabolites=True, include_reactions=True)