biggr_models.queries.utils

Attributes

root_directory
IDType
StrList
OptStr

Exceptions

NotFoundError	Common base class for all non-exit exceptions.
RedirectError	Common base class for all non-exit exceptions.

Functions

get_list(session, column_specs[, start, length, ...])
get_search_list(session, search_query, column_specs[, ...])
get_gene_list_for_model(model_bigg_id, session)
build_reaction_string(metabolite_list, lower_bound, ...)
database_version(session)
convert_id_to_query_filter(bigg_id, obj_cls)

Module Contents

biggr_models.queries.utils.root_directory = b'.'

biggr_models.queries.utils.IDType

biggr_models.queries.utils.StrList

biggr_models.queries.utils.OptStr

exception biggr_models.queries.utils.NotFoundError

Bases: Exception

Common base class for all non-exit exceptions.

exception biggr_models.queries.utils.RedirectError

Bases: Exception

Common base class for all non-exit exceptions.

biggr_models.queries.utils.get_list(session: sqlalchemy.orm.Session, column_specs: List[biggr_models.handlers.utils.DataColumnSpec], start: int = 0, length: int | None = None, search_value: str = '', search_regex: bool = False, pre_filter=None, post_filter=None)

biggr_models.queries.utils.get_search_list(session: sqlalchemy.orm.Session, search_query: str | Dict[str, str], column_specs: List[biggr_models.handlers.utils.DataColumnSpec], start: int = 0, length: int | None = None, search_value: str = '', search_regex: bool = False, pre_filter=None, post_filter=None)

biggr_models.queries.utils.get_gene_list_for_model(model_bigg_id, session)

biggr_models.queries.utils.build_reaction_string(metabolite_list, lower_bound, upper_bound, universal=False, html=True, format_met=None)

biggr_models.queries.utils.database_version(session)

biggr_models.queries.utils.convert_id_to_query_filter(bigg_id: IDType, obj_cls: Type[cobradb.models.Base])