Overview

Teaching: 30 min
Exercises: 0 min

Questions

• How do I explore the content (metabolites, reactions, genes, …) in a model?

• How can I search by name and other attributes?

Objectives

• Understand the basic data structures of models.

• Learn how to query models.

• Set a biological objective and simulate a model.

• Manipulate bounds for defining media conditions and knocking out reactions

• Importing models from different file formats

Key Points

• model.metabolites contains all metabolites in model.

• model.reactions contains all reactions in model.

• model.genes contains all genes in model.

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