Metabolic modeling for cell factory engineering

2. Genome-scale metabolic models

Overview

Teaching: 30 min
Exercises: 0 min
Questions
  • How do I explore the content (metabolites, reactions, genes, …) in a model?

  • How can I search by name and other attributes?

Objectives
  • Understand the basic data structures of models.

  • Learn how to query models.

  • Set a biological objective and simulate a model.

  • Manipulate bounds for defining media conditions and knocking out reactions

  • Importing models from different file formats

Key Points