Mass spectrometry-based metabolomics introduction#

The course will introduce MS-based metabolomics data, it’s basic processing and the downstream analysis. The course will be a mix of lectures and hands-on session where we will perform the basic processing steps using metaboigniter, a nextflow workflow, and acore, short for analytical core for the downstream analysis.

Agenda#

Time	Topic	lecturer
8.30 - 10.00	Introduction with overview of metabolomics	Maria Barranco-Altirriba
10.30 - 12.00	Steps in data processing and running metaboigniter hands-on	Henry Webel
12.00 - 13.00	Lunch (sandwiches are provided)	-
13.00 - 14.30	Steps in statistical analysis (lecture )	Maria Barranco-Altirriba
15.00 - 16.30	Steps in statistical analysis (Hands-On)	Henry Webel

Some details to the agenda points#

8.30-10.00 - introduction#

See the slides for introduction: will be here

10.30-12.00 - data processing and hands-on quantms#

Find the instruction here and the slides

Steps in data processing

13.00 - 14.30 - statistical analysis lecture#

See the slides for the statistical analysis: will be here

15.00 - 16.30 - hands-on statistical analysis#

Find the instruction here and the slides: will be here

Basic statistical analysis of a two-group experiment with one timepoint

Mass spectrometry-based metabolomics introduction

Contents