Native Compounds

List of all compounds native to E. coli included in the growth coupling design database.

H2O

C00001 , h2o_c

amn1_rev, amn3_rev, amn4_rev, hdg4, mth1
1.14.11.21, 1.14.20.10, 1.14.20.11, 1.14.20.12, 1.14.20.14, 1.14.20.7, 1.14.20.9, 1.20.4.4, 1.21.4.3, 1.21.4.4, 1.4.1.1, 1.4.1.10, 1.4.1.13, 1.4.1.14, 1.4.1.2, 1.4.1.4, 1.4.3.11, 1.4.3.19, 1.8.4.11, 2.1.2.1, 2.1.2.11, 2.1.2.7, 2.1.2.8, 2.3.1.161, 2.3.1.244, 2.6.1.63, 2.6.1.7, 2.6.1.83, 3.5.3.1
NAD+

C00003 , nad_c

amn1_rev, amn3_rev, amn4_rev
1.4.1.1, 1.4.1.10, 1.4.1.14, 1.4.1.2
NADH

C00004 , nadh_c

amn1, amn3, amn4, hdg3
1.1.1.28, 1.4.1.1, 1.4.1.10, 1.4.1.14, 1.4.1.2
NADPH

C00005 , nadph_c

amn1, hdg4
1.4.1.13, 1.4.1.4, 1.5.1.6, 1.8.1.9, 2.1.1.148
NADP+

C00006 , nadp_c

amn1_rev, mth1
1.2.1.52, 1.4.1.13, 1.4.1.4, 2.1.1.148, 2.3.1.161, 2.3.1.244
O2

C00007 , o2_c

amn1_rev, amn4_rev
1.4.3.11, 1.4.3.19
CoA

C00010 , coa_c

mth1
2.3.1.161, 2.3.1.244
CO2

C00011 , co2_c

mth1, mth5
1.14.11.1, 1.14.11.10, 1.14.11.17, 1.14.11.21, 1.14.11.28, 1.14.11.3, 1.14.11.39, 1.14.11.41, 1.14.11.45, 1.14.11.46, 1.14.11.48, 1.14.11.49, 1.14.11.55, 1.14.11.56, 1.14.11.57, 1.14.11.58, 1.14.11.6, 1.14.11.61, 1.14.11.62, 1.14.11.64, 1.14.11.71, 1.14.11.74, 1.14.11.75, 1.14.11.76, 1.14.20.10, 1.14.20.11, 1.14.20.12, 1.14.20.14, 1.14.20.7, 1.14.20.9, 1.3.98.3, 1.3.98.6, 1.5.1.6, 2.1.1.132, 2.3.1.161, 2.3.1.244, 2.3.1.37, 2.4.2.19, 2.4.2.54
Diphosphate

C00013 , ppi_c

mth1
6.3.2.40
Ammonia

C00014 , nh4_c

amn1, amn3, amn4, mth5
1.4.1.1, 1.4.1.10, 1.4.1.13, 1.4.1.14, 1.4.1.2, 1.4.1.4, 1.4.3.11, 1.4.3.19, 4.2.1.168, 4.3.1.32
AMP

C00020 , amp_c

mth1
2.4.2.7, 6.3.2.40
Pyruvate

C00022 , pyr_c

amn1_rev, amn4_rev
2.6.1.2, 2.6.1.44
L-Glutamate

C00025 , glu__L_c

amn3, amn4
2.6.1.2, 2.6.1.4
2-Oxoglutarate

C00026 , akg_c

amn3_rev, amn4_rev
1.2.1.52, 2.6.1.2, 2.6.1.4
Hydrogen peroxide

C00027 , h2o2_c

amn1, amn4
1.4.3.11, 1.4.3.19
Heme

C00032 , pheme_c

mth5
1.3.98.6
Acetate

C00033 , ac_c

mth1
2.1.1.152
Oxaloacetate

C00036 , oaa_c

amn1_rev, amn4_rev
2.6.1.1, 2.6.1.35
Glycine

C00037 , gly_c

amn1, amn3
2.1.2.1, 2.1.4.1, 2.6.1.4, 2.6.1.44
L-Alanine

C00041 , ala__L_c

amn1, amn4
2.6.1.2, 2.6.1.44
L-Lysine

C00047 , lys__L_c

amn1, amn3
2.1.4.3, 2.6.1.36, 2.6.1.71
Glyoxylate

C00048 , glx_c

amn1_rev, amn3_rev
2.6.1.4, 2.6.1.44
L-Aspartate

C00049 , asp__L_c

amn1, amn4
2.6.1.1, 2.6.1.35
Adenosine 3',5'-bisphosphate

C00054 , pap_c

hdg4
1.8.4.8
Formate

C00058 , for_c

mth5
3.5.1.10, 4.1.99.17
L-Glutamine

C00064 , gln__L_c

amn1, amn3
1.4.1.13, 1.4.1.14, 2.6.1.15
L-Serine

C00065 , ser__L_c

amn3, amn4
2.1.2.1, 2.6.1.45, 2.6.1.51
L-Methionine

C00073 , met__L_c

amn4, hdg4
1.8.4.11, 2.6.1.73
L-Tryptophan

C00078 , trp__L_c

amn1, amn3
2.6.1.27, 2.6.1.99
L-Phenylalanine

C00079 , phe__L_c

amn3
2.6.1.58
H+

C00080 , h_c

amn1, amn3, amn4, hdg3, hdg4, mth1
1.1.1.28, 1.4.1.1, 1.4.1.10, 1.4.1.13, 1.4.1.14, 1.4.1.2, 1.4.1.4, 1.5.1.6, 1.8.1.9, 2.1.1.130, 2.1.1.148, 2.1.1.235
L-Tyrosine

C00082 , tyr__L_c

amn1
2.6.1.5
Sulfite

C00094 , so3_c

hdg4
1.14.11.17, 1.8.4.8
L-Cysteine

C00097 , cys__L_c

amn1
2.6.1.3
beta-Alanine

C00099 , ala_B_c

amn1, amn3
2.6.1.120, 2.6.1.18
L-Leucine

C00123 , leu__L_c

amn1
2.6.1.42, 2.6.1.6
Putrescine

C00134 , ptrc_c

amn1
2.6.1.82
L-Histidine

C00135 , his__L_c

amn1
2.6.1.38
3-Methyl-2-oxobutanoic acid

C00141 , 3mob_c

amn3_rev
2.1.2.11, 2.6.1.66
Phenylpyruvate

C00166 , phpyr_c

amn3_rev
2.6.1.58
Hydroxypyruvate

C00168 , hpyr_c

amn3_rev, amn4_rev
2.6.1.45, 2.6.1.51
L-Valine

C00183 , val__L_c

amn3
2.6.1.66
Sarcosine

C00213 , sarcs_c

mth1
2.1.1.156, 2.1.1.162, 2.1.1.20
3-Oxopropanoate

C00222 , msa_c

amn1_rev, amn3_rev
2.6.1.120, 2.6.1.18
Acetyl phosphate

C00227 , actp_c

hdg4
1.21.4.3, 1.21.4.4
Succinate semialdehyde

C00232 , sucsal_c

amn1_rev, amn3_rev, amn4_rev
2.6.1.19, 2.6.1.96
4-Methyl-2-oxopentanoate

C00233 , 4mop_c

amn1_rev
2.6.1.42, 2.6.1.6
Taurine

C00245 , taur_c

amn1, amn3
2.6.1.55, 2.6.1.77
Pyridoxal

C00250 , pydx_c

amn3_rev
2.6.1.30
Prephenate

C00254 , pphn_c

amn1_rev
2.6.1.79
Acetoacetyl-CoA

C00332 , aacoa_c

amn1_rev
2.6.1.111
4-Aminobutanoate

C00334 , 4abut_c

amn1, amn3, amn4
2.6.1.19, 2.6.1.96
dTMP

C00364 , dtmp_c

mth4
2.1.1.148, 2.1.1.45
5-Aminolevulinate

C00430 , 5aop_c

amn3
2.3.1.37, 2.6.1.43
N-Acetylornithine

C00437 , acorn_c

amn1
2.6.1.11
L-Aspartate 4-semialdehyde

C00441 , aspsa_c

amn1_rev, amn3_rev
2.6.1.46, 2.6.1.76
Pyridoxamine

C00534 , pydam_c

amn3
2.6.1.30
4-Aminobutyraldehyde

C00555 , 4abutn_c

amn1_rev
2.6.1.82
Trimethylamine

C00565 , tma_c

hdg4
1.21.4.4
Dimethyl sulfide

C00580 , dms_c

mth1
2.1.1.334
LL-2,6-Diaminoheptanedioate

C00666 , 26dap_LL_c

amn1
2.6.1.83
Betaine

C00719 , glyb_c

mth1
2.1.1.157, 2.1.1.161, 2.1.1.162
Oxalureate

C00802 , oxur_c

amn4_rev
2.6.1.112
D-Methionine

C00855 , met__D_c

amn3
2.6.1.41
Mercaptopyruvate

C00957 , mercppyr_c

amn1_rev
2.6.1.3
O-Phospho-L-serine

C01005 , pser__L_c

amn1
2.6.1.52
Protoporphyrinogen IX

C01079 , pppg9_c

mth5
1.3.98.3
L-Histidinol phosphate

C01100 , hisp_c

amn1
2.6.1.9
3-(4-Hydroxyphenyl)pyruvate

C01179 , 34hpp_c

amn1_rev
2.6.1.5
GDP-4-dehydro-6-deoxy-D-mannose

C01222 , gdpddman_c

amn1_rev
2.6.1.102, 4.2.1.168
N-Acetyl-L-glutamate 5-semialdehyde

C01250 , acg5sa_c

amn1_rev
2.6.1.11
3-(Imidazol-4-yl)-2-oxopropyl phosphate

C01267 , imacp_c

amn1_rev
2.6.1.9
Ornithine

C01602 , orn_c

amn1
2.6.1.8
Precorrin 2

C02463 , dscl_c

mth1
2.1.1.107
S-Methyl-L-methionine

C03172 , mmet_c

mth1
2.1.1.12
3-Phosphonooxypyruvate

C03232 , 3php_c

amn1_rev
2.6.1.52
N2-Succinyl-L-ornithine

C03415 , sucorn_c

amn1
2.6.1.81
2,3,4,5-Tetrahydrodipicolinate

C03972 , thdp_c

amn1_rev
2.6.1.83
dTDP-4-amino-4,6-dideoxy-D-galactose

C04346 , dtdp4addg_c

amn1
2.6.1.59
N-Succinyl-LL-2,6-diaminoheptanedioate

C04421 , sl26da_c

amn1
2.6.1.17
N-Succinyl-2-L-amino-6-oxoheptanedioate

C04462 , sl2a6o_c

amn1_rev
2.3.1.117, 2.6.1.17
5'-Deoxyadenosine

C05198 , dad_5_c

mth5
1.1.99.38, 1.21.98.3, 1.3.98.3, 1.3.98.6, 2.5.1.147, 4.1.99.17, 4.3.1.32
N-Succinyl-L-glutamate 5-semialdehyde

C05932 , sucgsa_c

amn1_rev
2.6.1.81
2-Oxo-3-hydroxy-4-phosphobutanoate

C06054 , ohpb_c

amn1_rev
2.6.1.52
O-Phospho-4-hydroxy-L-threonine

C06055 , phthr_c

amn1
2.6.1.52
Arsenite

C06697 , aso3_c

hdg4
1.20.4.4
(E)-3-(Methoxycarbonyl)pent-2-enedioate

C11514 , aconm_c

mth1
2.1.1.144
dTDP-4-oxo-6-deoxy-D-glucose

C11907 , dtdp4d6dg_c

amn1_rev
2.6.1.33, 2.6.1.59
Iminoglycine

C15809 , dhgly_c

mth5
2.5.1.147
UDP-L-Ara4N

C16153 , udpLa4n_c

amn1
2.6.1.87
UDP-L-Ara4O

C16155 , udpLa4o_c

amn1_rev
2.6.1.87
L-2-Methyltryptophan

C16831 , Nmtrp_c

mth1
2.1.1.106