2 Instructions

nf-core rnaseq pipeline

Topics covered

• RNAseq Quality control analysis
• Mapping of short reads (Bowtie2)
• Quantification of gene expression (Salmon)
• Exploratory data analyses

Data

• Type of data: bulk RNASeq
• Organism: Escherichia coli K-12 MG1655
• Codes location: GitHub repository
• Reference data used: E. coli* K-12 MG1655 NCBI RefSeq: NC_000913.3