Register Downstream data - draft

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This guide is intended for the Pre-Pilot Plant team.

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This guide is a draft. The showed implementation can only be found in Benchling Test Environment.

Test the implementation

To test the implementation showed in the guide, access Benchling Test Environment:

🔗 https://dtubiosustaintest.benchling.com/

If you cannot access, we have to create a profile for you. Contact us.

1. Create new Notebook entry (ELN) from Template

Create your new Notebook Entry starting from a Template:

2. Identify starting material

The starting material could be a Fermentatin Culture entity created by the Upstream team, or created by you (see Option 1 and Option 2 in the screenshot downbelow).

Note: If the starting material is not of type “Fermentation Culture”, you can add your own registration table of type “Processed Material”. (Insert > Registration table > Schema “Processed Material”)

3. Add first processing step

Register your first processing step by adding a new Sub-Template:

Insert Sub-Template:

Select the relevant step you need:

Example: Filtration

Fill in the Input, Output and Step table to register the necessary step metadata.

4. Add next processing step

New processing steps can be added by adding additional Sub-templates:

Dashboard

You will find the links to the available dashboards at the beginning of the Notebook entry.

Example:

In the Fermentation Culture Processing Dashboard add the IDs of the Fermentation Cultures you want to compare the yield or the process for:

To change the selected Fermentation Cultures, click on the […] icon > “Edit parameters”.

Implementation status:

New Step “types” (and relevant equipment and parameters) needs to be identified.

If you have any question, don’t hesitate to contact us at lims_support@biosustain.dtu.dk.